Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq5077 129 1e-27 seq6261 109 1e-21 seq21680 102 2e-19 seq15227 102 2e-19 seq29849 95.1 3e-17 seq10805 77.0 8e-12 >seq5077 Length=55412 Score = 129 bits (142), Expect = 1e-27 Identities = 133/172 (77%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG-GGGTTC 308 ||||||||||||| || |||||||||| | |||||||||| |||| || |||||| Sbjct 53867 CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCAC---CCTCGACGAGGGTTC 53923 Query 309 TTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTG 368 ||||| |||||||||||||||||| ||| ||||||||| ||| |||||||||||||| Sbjct 53924 TTTTCACCTTTCCCTCACGGTACTTCTTCGTTATCGGTCACCCAGGAGTATTTAGCCTTG 53983 Query 369 GAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 | | ||||| | ||||| || || | ||||| || | ||||||| Sbjct 53984 CAAGGGGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 54035 >seq6261 Length=35869 Score = 109 bits (120), Expect = 1e-21 Identities = 138/188 (73%), Gaps = 15/188 (8%) Strand=Plus/Minus Query 198 ATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT---GGGCTCCC 254 ||||||||| | |||||| | || ||| |||| |||| ||| ||||||| Sbjct 28150 ATAAGTCGCCGGCCCATTCTTTAACAGGCACGCGGTCA-------AAGCCTCGGGCTCCT 28098 Query 255 ACTGCTTGTACGCA---TACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTT 311 ||||| | || | || ||||||| | ||||||||||||||| | | ||||||| Sbjct 28097 CCTGCTGCTTCGGAGCTTATGGTTTCATGTTCTATTTCACTCCCCGA--CAGTGTTCTTT 28040 Query 312 TCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAG 371 || || ||||| |||||||||| ||| |||||||||| || |||||||||||||| | Sbjct 28039 TCACCCTTCCCCCACGGTACTACTTCGCTATCGGTCACCTAGAAGTATTTAGCCTTGCAA 27980 Query 372 GATGGTCC 379 | ||||| Sbjct 27979 GGGGGTCC 27972 >seq21680 Length=18110 Score = 102 bits (112), Expect = 2e-19 Identities = 102/130 (78%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||||| ||| ||| ||||||| | |||||||||| Sbjct 11541 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCC-TAAATAGGGTTCTTTT 11483 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | || | || |||| ||| |||| Sbjct 11482 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 11423 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 11422 GTGGTCCCCC 11413 >seq15227 Length=25994 Score = 102 bits (112), Expect = 2e-19 Identities = 102/130 (78%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||||| ||| ||| ||||||| | |||||||||| Sbjct 24203 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCC-TAAATAGGGTTCTTTT 24145 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || |||||| ||||| | || | || |||| ||| |||| Sbjct 24144 CACCTTTCCCTCACGGTACTTGTACACTATTGGTCATTGAGGAATACTTAGGCTTAGAGG 24085 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 24084 GTGGTCCCCC 24075 >seq29849 Length=8764 Score = 95.1 bits (104), Expect = 3e-17 Identities = 99/128 (77%), Gaps = 3/128 (2%) Strand=Plus/Minus Query 257 TGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTTCG 314 || |||| ||||| | | ||||| ||| ||| ||||||| | ||||||||||| Sbjct 3919 TGATTGTTCGCATCTGATCTCAGGTTCTCTATTGCACTCCC-TAAATAGGGTTCTTTTCA 3861 Query 315 CCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGAT 374 ||||||||||||||| || || | |||||||||| | || | ||||||| ||| |||| Sbjct 3860 CCTTTCCCTCACGGTGCTTGTACGCTATCGGTCATTGAGGAATATTTAGGCTTAGAGGGC 3801 Query 375 GGTCCCCC 382 |||||||| Sbjct 3800 GGTCCCCC 3793 >seq10805 Length=30594 Score = 77.0 bits (84), Expect = 8e-12 Identities = 67/82 (82%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 282 TCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTA 341 |||||| ||||||| | ||||||||||| |||||||||||||||||| || | ||| Sbjct 12311 TCTATTGCACTCCC-TAAATAGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTACGCTA 12369 Query 342 TCGGTCAGTCAGTAGTATTTAG 363 ||||||| | || | ||||||| Sbjct 12370 TCGGTCATTGAGGAATATTTAG 12391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1240999102848