Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq27249 136 8e-30 seq23542 136 8e-30 seq15335 136 8e-30 seq11318 95.1 2e-17 >seq27249 Length=78643 Score = 136 bits (150), Expect = 8e-30 Identities = 216/304 (71%), Gaps = 18/304 (6%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || | || | ||||||||||||||| Sbjct 44636 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAATTTCCTTA-TGCTGCCTCCCGTAG 44694 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||| ||||| ||||||||||| ||| | | ||| |||||| | || |||| ||| Sbjct 44695 GAGTCTGTGCCGTATCTCAGTCCCAGCGTGACTGATCATCCTCTCGGACCAGCTAATGAT 44754 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| ||| | ||||||| ||||| ||||| |||||| | |||||| | || || Sbjct 44755 CATCGCCTTAATAAGCTATTACCTCACTAACTAGCTAATCAGACGCGAGTCTCTCCTT-- 44812 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240 | | | | || | | ||| ||||| | | || | || |||||| || Sbjct 44813 GGGTTGATTCCT---------CCTTTTGC--TCCTCAGCC--TACG-GGGATTAGCAGTC 44858 Query 241 GTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGC 300 |||| || ||| |||| ||| || | |||||| || || |||||| |||||||||| Sbjct 44859 GTTTTCAGCTGTTGTTCCCCTCCTAAGGACAGGTT-CTTGCGCGTTACTTACCCGTCCGC 44917 Query 301 CACT 304 |||| Sbjct 44918 CACT 44921 >seq23542 Length=65630 Score = 136 bits (150), Expect = 8e-30 Identities = 122/153 (80%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| || ||||||||||||| ||||| |||||| Sbjct 29920 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 29861 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | ||| || || || |||| ||| | || Sbjct 29860 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGG 29801 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||| || ||| || |||||||||||||| Sbjct 29800 CTTGGTCAGCCTTTACCTGACCAACTACCTAAT 29768 >seq15335 Length=10014 Score = 136 bits (150), Expect = 8e-30 Identities = 122/153 (80%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| || ||||||||||||| ||||| |||||| Sbjct 5945 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 5886 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | ||| || || || |||| ||| | || Sbjct 5885 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGG 5826 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||| || ||| || |||||||||||||| Sbjct 5825 CTTGGTCAGCCTTTACCTGACCAACTACCTAAT 5793 >seq11318 Length=17273 Score = 95.1 bits (104), Expect = 2e-17 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 8 CTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTG 67 ||| ||| || |||| |||||||| ||| || ||||||||||||| ||| | |||||| | Sbjct 12846 CTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCATGGGAGTCCG 12905 Query 68 GGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGC 127 | ||| ||||| ||||| || | | | ||| || || || |||| ||| | || Sbjct 12906 GTTCGTCTCTCAATCCCAGTGCGACTGATCATCCGAAAAGACCAGCTAAGCATCATTAGC 12965 Query 128 TTGGTGGGCTATTATCTCACCAACTACCTAAT 159 ||||| || ||| || ||||||||| |||| Sbjct 12966 TTGGTCAGCCTTTACCTGACCAACTACGTAAT 12997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 997916804352