Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq23542 134 2e-29 seq15335 134 2e-29 seq27249 91.5 2e-16 seq10644 82.4 1e-13 seq27585 73.4 7e-11 >seq23542 Length=65630 Score = 134 bits (148), Expect = 2e-29 Identities = 203/288 (70%), Gaps = 8/288 (3%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| |||||||| || ||||||| || |||| | | |||||||| ||| || Sbjct 30277 CCCATGCTTTCGCACCCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGT 30218 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| |||| |||| || |||||||| || |||||| |||||| | ||||| ||| Sbjct 30217 TCCTTCGTAGATCTCCGGATTTCACCCCTCCACACGAAATTCCACTCTCCTCTGTCTCAC 30158 Query 121 TCAAGAAAAACAGTTTCAAATGCAG---GCTATGGGTTGAGCCCATAGTTTTCACATCTG 177 ||||| || ||||| | ||| || | ||| | |||||| | Sbjct 30157 TCAAGTGAATTGGTTTCGAGAGCATTCCGCCACTTTTTGGCGAC-----TTTCACTTTCA 30103 Query 178 ACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCT 237 || | | |||||||| ||||||||| |||| | | |||| | ||| |||||| || Sbjct 30102 ACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCC 30043 Query 238 ACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 ||| |||||||||||||||||||| ||||||||| ||||| |||||| Sbjct 30042 CCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 29995 >seq15335 Length=10014 Score = 134 bits (148), Expect = 2e-29 Identities = 203/288 (70%), Gaps = 8/288 (3%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| |||||||| || ||||||| || |||| | | |||||||| ||| || Sbjct 6302 CCCATGCTTTCGCACCCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGT 6243 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| |||| |||| || |||||||| || |||||| |||||| | ||||| ||| Sbjct 6242 TCCTTCGTAGATCTCCGGATTTCACCCCTCCACACGAAATTCCACTCTCCTCTGTCTCAC 6183 Query 121 TCAAGAAAAACAGTTTCAAATGCAG---GCTATGGGTTGAGCCCATAGTTTTCACATCTG 177 ||||| || ||||| | ||| || | ||| | |||||| | Sbjct 6182 TCAAGTGAATTGGTTTCGAGAGCATTCCGCCACTTTTTGGCGAC-----TTTCACTTTCA 6128 Query 178 ACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCT 237 || | | |||||||| ||||||||| |||| | | |||| | ||| |||||| || Sbjct 6127 ACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCC 6068 Query 238 ACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 ||| |||||||||||||||||||| ||||||||| ||||| |||||| Sbjct 6067 CCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 6020 Score = 87.8 bits (96), Expect = 3e-15 Identities = 143/205 (70%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 55 TGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTC 114 |||||||| || | || || ||||||||||||||| ||| | |||||| |||| || Sbjct 220 TGGTGTTCTTCTG-ATCTCAACGCATTTCACCGCTCCACCAGAAATTCCCTCTGCCCCTA 162 Query 115 CAGCACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACAT 174 | | |||| || | || ||| | || | | |||||||| | ||| || Sbjct 161 CCGTACTCCAGCTTAGCAAATTCCACCGCCTGTCCAAGATTGAGCCCTGGGATTTGACGG 102 Query 175 CTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCA 234 ||||| | || ||||| | |||||| |||||| | |||||||||||||||| Sbjct 101 TGGACTTAACAATCCATCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCAT 42 Query 235 CCTACGTATTACCGCGGCTGCTGGC 259 || ||||||||||||||| |||| Sbjct 41 CCACTGTATTACCGCGGCTGGTGGC 17 >seq27249 Length=78643 Score = 91.5 bits (100), Expect = 2e-16 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 201 CTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCA 260 |||||| |||||| | |||||||||||||||| ||| ||||||||||||||||||| | Sbjct 44485 CTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTACCGCGGCTGCTGGTA 44544 Query 261 CGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 | ||||||| |||||||||||| || Sbjct 44545 TAGATTTAGCCGATACTTATTCCTCAGATA 44574 >seq10644 Length=21193 Score = 82.4 bits (90), Expect = 1e-13 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 55 TGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTC 114 ||||||| | | || || ||||||||||||||| ||| | |||||| |||| || Sbjct 17985 TGGTGTTATTTCTGATCTCAACGCATTTCACCGCTCCACCAGAAATTCCCTCTGCCCCTA 18044 Query 115 CAGCACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACAT 174 | | |||| || | || ||| | || | | |||||||| | ||| || Sbjct 18045 CCGTACTCCAGCTTAGCAAATTCCACCGCCTGTCCAAGATTGAGCCCTGGGATTTGACGG 18104 Query 175 CTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCA 234 ||||| | || ||||| | |||||| |||||| | |||||||||||||||| Sbjct 18105 TGGACTTAACAATCCATCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCAT 18164 Query 235 CCTACGTATTACCGCGGCTGCTGGC 259 || ||||||||||||||| |||| Sbjct 18165 CCACTGTATTACCGCGGCTGGTGGC 18189 >seq27585 Length=13586 Score = 73.4 bits (80), Expect = 7e-11 Identities = 78/103 (76%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || || ||| | |||||| ||||| | | ||||||||||||| ||| |||||||| Sbjct 2301 CCACCAACAGACGCTTTACGGCCAATCATTATGGATAACGCTTGCATCCTCTGTATTACC 2242 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 || | |||||||| ||||||| | ||||||||| ||| || Sbjct 2241 GCAGTTGCTGGCAAAGAGTTAGCTGATGCTTATTCCCCAGATA 2199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828411420487