Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq9896 264 2e-68 seq21772 181 2e-43 seq29849 174 2e-41 seq16674 163 4e-38 seq15228 158 2e-36 seq21680 109 9e-22 seq4414 105 1e-20 seq20499 89.7 8e-16 seq2608 84.2 3e-14 seq5077 82.4 1e-13 seq26703 73.4 6e-11 >seq9896 Length=22601 Score = 264 bits (292), Expect = 2e-68 Identities = 223/273 (82%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| ||||| |||||| ||| |||| ||| |||||| Sbjct 12783 GGCGGGCTTACTCCTTAGATGCTTTCAGTAGTTATCCGCTCCGCACTTGGCTACCCAGCG 12724 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 12723 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 12664 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 12663 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 12604 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 12603 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 12544 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||| | || |||||||||||| Sbjct 12543 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 12511 >seq21772 Length=3286 Score = 181 bits (200), Expect = 2e-43 Identities = 164/205 (80%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 53 GCTTCCCAGC-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGT 111 ||| |||||| | | | | |||| | ||||||| |||||||||| |||| ||||||| Sbjct 2722 GCTACCCAGCGTTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGT 2781 Query 112 CCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGA 171 |||||||||||| ||| || ||||||||| || |||||||| | |||| ||||| | Sbjct 2782 CCTCTCGTACTAGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCAGATATGGACCAA 2841 Query 172 ACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAAC 231 ||| |||| |||||| ||||||||||| | || ||||||||||||||||||||||| Sbjct 2842 ACTATCTCATGACGTTGTGAACCCAGCTGATCTACCACTTTAATGGGCGAACAGCCCAAC 2901 Query 232 CCTTGGGACCTACTTCAGCCCCAGG 256 |||||| || |||| || ||||||| Sbjct 2902 CCTTGGAACATACTACAACCCCAGG 2926 Score = 149 bits (164), Expect = 1e-33 Identities = 108/125 (86%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 132 TCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGA 191 ||||||||| || |||||||| | |||| ||||||||||||||| ||||||||||| Sbjct 2477 TCCTCTCAATGCTCTAACGCCCACACCAGATATGGACCGAACTGTCTCACGACGTTCTGA 2536 Query 192 ACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCC 251 ||||||||| ||| || ||||||||||||||||||||||||||||| || |||| || || Sbjct 2537 ACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTACAACC 2596 Query 252 CCAGG 256 ||||| Sbjct 2597 CCAGG 2601 >seq29849 Length=8764 Score = 174 bits (192), Expect = 2e-41 Identities = 190/251 (76%), Gaps = 5/251 (2%) Strand=Plus/Minus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | |||||||| ||| || ||| || ||| ||||| ||| | Sbjct 6675 CAGCAGTTCTTCCATACCAACTTAGCCGCCCGGCGCTGCTATTAGCATAACAACCGGTAC 6616 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| | ||| ||| |||||||||||||| || | ||||| || | ||| Sbjct 6615 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGTTCCTCACAGTTCTCCCT 6556 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| |||||| |||||||| || | ||||||||| |||||| ||| ||| Sbjct 6555 TTAACACCAACGGTAGATAGGAACCGAACTATCACACGACGTTCTAAACCCAACTCACGT 6496 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || ||| ||| |||||||| ||||||||||||||||| ||||| ||||||||| || | Sbjct 6495 ACCACTTGAATCGGCGAACAACCCAACCCTTGGGACCTTCTTCA-ACCCAGGATGTGATG 6437 Query 265 AGCCGACATCG 275 || |||||||| Sbjct 6436 AGTCGACATCG 6426 >seq16674 Length=14338 Score = 163 bits (180), Expect = 4e-38 Identities = 193/259 (75%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCA 75 ||||||||| |||| |||| ||| |||| ||| |||| | | | | | |||| Sbjct 9374 CTTAGATGCTTTCAATAGTTATGTGCTCCGCACTTGGCTACCCATCATTTACCGTGGGCA 9315 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 || ||||||| ||||| |||| ||| || ||||||||||||||| ||| || |||| Sbjct 9314 TTATAACTGGTACACCAAAGGTGCATCCTTCTTGGTCCTCTCGTACTAGGGAAAG-TCCT 9256 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 ||||| || |||| ||| | |||| ||||| | ||| ||| |||||||| ||||| Sbjct 9255 CTCAATGCTCTAACGCGCACACCAGATATGGACCAACCTGGCTCATGACGTTCTAAACCC 9196 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 ||||| ||| || |||||||||||||||| |||||| ||||| || |||| || || || Sbjct 9195 AGCTCACGTACCGCTTTAATGGGCGAACAACCCAACACTTGGAACATACTACATGCCTAG 9136 Query 256 GATGAGACGAGCCGACATC 274 | | || |||| ||||| Sbjct 9135 GTGGCGAAGAGCTAACATC 9117 >seq15228 Length=19691 Score = 158 bits (174), Expect = 2e-36 Identities = 176/233 (76%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 47 AACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATC 106 |||||||| || ||| ||| || ||| ||||| ||| ||| | ||||| | ||| | Sbjct 754 AACTTAGCCGCCTAGCGCTGCTATTAGCATAACAACCGGTACACTATAGGTTGGCCCAAC 695 Query 107 CCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCC---TACGCCCACGACGG--- 160 || |||||||||||||| || |||||||| || | ||| || |||| | || Sbjct 694 CCAGTCCTCTCGTACTAGGGTTAGCTCCTCGCAGTTCTCCCATTAACCCCA--ATGGTAA 637 Query 161 ATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCG 220 ||||| ||||||||||||| || | |||| |||||| ||| | | || ||| ||| |||| Sbjct 636 ATAGGAACCGAACTGTCTCACGGCATTCTAAACCCAACTCACATACCACTTGAATCGGCG 577 Query 221 AACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACAT 273 |||| | |||||||||||||| ||||| ||| |||||| || ||| |||||| Sbjct 576 AACAACTGAACCCTTGGGACCTTCTTCATCCCTAGGATGTGATGAGTCGACAT 524 >seq21680 Length=18110 Score = 109 bits (120), Expect = 9e-22 Identities = 84/100 (84%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 176 TCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTT 235 |||| ||||| ||| |||||| ||| ||| || ||| ||| |||||||| || ||||||| Sbjct 14989 TCTCACGACGCTCTAAACCCAACTCACGTACCACTTGAATCGGCGAACAACCGAACCCTT 14930 Query 236 GGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||||| ||||| |||||||||| || ||| |||||||| Sbjct 14929 GGGACCTTCTTCAACCCCAGGATGTGATGAGTCGACATCG 14890 Score = 95.1 bits (104), Expect = 2e-17 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 176 TCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTT 235 |||| ||||| ||| |||||| ||| ||| || ||| ||| | |||| || ||||||| Sbjct 14380 TCTCACGACGCTCTAAACCCAACTCACGTACCACTTGAATAAACAAACAACCGAACCCTT 14321 Query 236 GGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||||| ||||| |||||||||| || ||| |||||||| Sbjct 14320 GGGACCTTCTTCAACCCCAGGATGTGATGAGTCGACATCG 14281 >seq4414 Length=25128 Score = 105 bits (116), Expect = 1e-20 Identities = 130/175 (74%), Gaps = 7/175 (4%) Strand=Plus/Plus Query 18 TTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCAC--TTGGCA 75 |||||||| ||||| |||| | | | |||| ||| ||||| | || || | |||| Sbjct 7903 TTAGATGCTTTCAGTAGTTATTCGCTTCGCACTTGGCTACCCAG-TGTGTACCGTGGGCA 7961 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 | ||||||| || |||||| || |||||||||||||||| || ||| || |||| Sbjct 7962 TAATAACTGGTACATTAGAGGT----CCTTCCCGGTCCTCTCGTATTAGGGAAAGGTCCT 8017 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTG 190 || || || |||||||| |||||| ||||||||||||||| ||| ||| || Sbjct 8018 CTTAATGTTTTAACGCCCACACCGGATATGGACCGAACTGTCTCACGATGTTGTG 8072 >seq20499 Length=41632 Score = 89.7 bits (98), Expect = 8e-16 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 120 ACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTC 179 |||| ||| || || |||||| || |||||||| |||||| ||||||||||||||| Sbjct 16654 ACTAGGGAAAGGTCTTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTC 16595 Query 180 GCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGG 218 |||| || |||||||||||| ||| |||||||||| Sbjct 16594 ACGACATTTTGAACCCAGCTCACGTATTGCTTTAATGGG 16556 >seq2608 Length=25132 Score = 84.2 bits (92), Expect = 3e-14 Identities = 92/121 (76%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 21 GATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCAGTAC 79 ||| | ||||| |||||| ||| |||| ||| |||||| | | | | |||| | Sbjct 9434 GATACTTTCAGTAGTTATCCACTCCGCACTTGGCTACCCAGCGTTTACCGTGGGCACGAT 9375 Query 80 AACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCA 139 ||||||| |||||||||| |||| || |||||||||||||||| ||| || || ||||| Sbjct 9374 AACTGGTACACCAGAGGTGCGTCCTTCTCGGTCCTCTCGTACTAGGGAAAGGTCATCTCA 9315 Query 140 A 140 | Sbjct 9314 A 9314 >seq5077 Length=55412 Score = 82.4 bits (90), Expect = 1e-13 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 193 CCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCC 252 |||||||| ||| | |||||||||| ||||| |||||||||||| || |||| |||||| Sbjct 52215 CCCAGCTCACGTACTGCTTTAATGGGTGAACAACCCAACCCTTGGAACATACTACAGCCC 52274 Query 253 CAGGATGAGACGAGCCGACATCG 275 |||| | | |||| ||||||| Sbjct 52275 CAGGTGGCAAAGAGCTGACATCG 52297 >seq26703 Length=54001 Score = 73.4 bits (80), Expect = 6e-11 Identities = 55/65 (85%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 159 GGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGG 218 ||||| ||||||||||||||| | ||||||| ||| |||||| | | | |||||||||| Sbjct 18321 GGATATGGACCGAACTGTCTCACTACGTTCTAAACTCAGCTCACCTACTACTTTAATGGG 18380 Query 219 CGAAC 223 ||||| Sbjct 18381 CGAAC 18385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780433925092