Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq23542 269 8e-70 seq15335 269 8e-70 seq27249 246 9e-63 seq11318 178 4e-42 seq10644 77.0 1e-11 >seq23542 Length=65630 Score = 269 bits (298), Expect = 8e-70 Identities = 258/327 (79%), Gaps = 5/327 (2%) Strand=Plus/Plus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| |||||| |||| |||||| | | ||| |||| | || || Sbjct 29768 ATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 29827 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| |||||| ||| |||||||||||| || ||||| ||||| ||||||||||||| Sbjct 29828 ATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 29887 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG--CCT 345 ||| ||| ||||||||| |||||| ||| |||||| |||||||| || ||||| || Sbjct 29888 AATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCACT 29947 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403 | | | |||||||||| || || | | ||| ||||| | ||| ||||| ||||||| Sbjct 29948 GCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCC 30007 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463 ||||||||| |||||||||||||||||||| ||| |||||| || ||| | |||||| | Sbjct 30008 CGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAATGA 30067 Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGT 490 || |||||||||||| |||||| ||| Sbjct 30068 CT-GGGCGTAAAGGGCACGTAGGCGGT 30093 >seq15335 Length=10014 Score = 269 bits (298), Expect = 8e-70 Identities = 258/327 (79%), Gaps = 5/327 (2%) Strand=Plus/Plus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| |||||| |||| |||||| | | ||| |||| | || || Sbjct 5793 ATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 5852 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| |||||| ||| |||||||||||| || ||||| ||||| ||||||||||||| Sbjct 5853 ATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 5912 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG--CCT 345 ||| ||| ||||||||| |||||| ||| |||||| |||||||| || ||||| || Sbjct 5913 AATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCACT 5972 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403 | | | |||||||||| || || | | ||| ||||| | ||| ||||| ||||||| Sbjct 5973 GCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCC 6032 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463 ||||||||| |||||||||||||||||||| ||| |||||| || ||| | |||||| | Sbjct 6033 CGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAATGA 6092 Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGT 490 || |||||||||||| |||||| ||| Sbjct 6093 CT-GGGCGTAAAGGGCACGTAGGCGGT 6118 Score = 77.0 bits (84), Expect = 1e-11 Identities = 68/84 (81%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 417 GCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAG 476 |||| ||||||||||||||| || || ||||||||||||||| | | |||||||||| Sbjct 17 GCCACCAGCCGCGGTAATACAGTGGATGCAAGCGTTATCCGGAATGA-TTGGGCGTAAAG 75 Query 477 GGTGCGTAGGTGGTTTCTTAAGTC 500 || |||| ||| || ||||||| Sbjct 76 CGTCTGTAGATGGATTGTTAAGTC 99 >seq27249 Length=78643 Score = 246 bits (272), Expect = 9e-63 Identities = 254/329 (77%), Gaps = 4/329 (1%) Strand=Plus/Minus Query 150 AGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATC 209 |||| |||| ||||||||||||||||||| || |||||| ||||| ||||||| |||| Sbjct 44811 AGGAGAGACTCGCGTCTGATTAGCTAGTTAGTGAGGTAATAGCTTATTAAGGCGATGATC 44752 Query 210 AGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTA 269 | |||| | | |||||| ||||| | ||| ||| ||||||| |||| || ||||||| Sbjct 44751 ATTAGCTGGTCCGAGAGGATGATCAGTCACGCTGGGACTGAGATACGGCACAGACTCCTA 44692 Query 270 CGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCG 329 |||||||||||| | |||| || | |||||||| ||||||||| | ||||| |||| | Sbjct 44691 CGGGAGGCAGCA-TAAGGAAATTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGTG 44633 Query 330 TGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTA 387 || | |||||||| | |||||| || ||| | | | | ||||| ||||||| || Sbjct 44632 TGGAGGTAGAAGGCCTGCAGGTCGTGAACTTCTTTTCCCGACGAAGAAGCAATGACGATA 44573 Query 388 CTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTA 447 |||||| ||| ||||||| | | ||||||||||||||||||| ||| || | Sbjct 44572 TCTGAGGAATAAGTATCGGCTAAATCTATACCAGCAGCCGCGGTAATACAGAGGATGCAA 44513 Query 448 GCGTTATCCGGAATTACTGGGGCGTAAAG 476 |||||||||||||| | | |||||||||| Sbjct 44512 GCGTTATCCGGAATGA-TTGGGCGTAAAG 44485 >seq11318 Length=17273 Score = 178 bits (196), Expect = 4e-42 Identities = 238/327 (73%), Gaps = 7/327 (2%) Strand=Plus/Minus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 |||| |||||||| |||||| |||| |||||| | ||| |||| | || || Sbjct 12997 ATTACGTAGTTGGTCAGGTAAAGGCTGACCAAGCTAATGATGCTTAGCTGGTCTTTTCGG 12938 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| | | || ||| | ||||| ||| || ||||| | ||| ||||||||||||| Sbjct 12937 ATGATCAGTCGCACTGGGATTGAGAGACGAACCGGACTCCCATGGGGGGCAGCAGTGGGG 12878 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG--CCT 345 ||| ||| ||||||||| |||||| ||| ||| || |||||||| || ||||| || Sbjct 12877 AATCTTGGACAATGGGCGAAAGCCCGATCCAGTAATATCGCGTGAGTGAAGAAGGACACT 12818 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGGAAGCCC 403 | | |||||||| | || || || | || ||||| | ||| ||||| ||||||| Sbjct 12817 GCCGCCTGTAAAGCTATTTCGTCGAGTCCGCCATCATGACCGGACTCGAGGAAGAAGCCC 12758 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463 || |||||| | |||||||||||| |||| ||| |||||| || || | | |||| Sbjct 12757 CGACTAACTCCATGCCAGCAGCCGTTGTAAGACG--GGGGGCAAGTGTACTTTGAGATTA 12700 Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGT 490 || | |||||| ||| |||||| ||| Sbjct 12699 CT-GAGCGTAATGGGCACGTAGGCGGT 12674 >seq10644 Length=21193 Score = 77.0 bits (84), Expect = 1e-11 Identities = 68/84 (81%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 417 GCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAG 476 |||| ||||||||||||||| || || ||||||||||||||| | | |||||||||| Sbjct 18189 GCCACCAGCCGCGGTAATACAGTGGATGCAAGCGTTATCCGGAATGA-TTGGGCGTAAAG 18131 Query 477 GGTGCGTAGGTGGTTTCTTAAGTC 500 || |||| ||| || ||||||| Sbjct 18130 CGTCTGTAGATGGATTGTTAAGTC 18107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1496875206528