Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq11510 315 1e-83 seq31675 295 1e-77 seq300 219 8e-55 seq6707 208 1e-51 seq6113 188 1e-45 seq6327 147 4e-33 seq28513 125 1e-26 seq16911 89.7 1e-15 seq28970 86.0 1e-14 >seq11510 Length=33421 Score = 315 bits (348), Expect = 1e-83 Identities = 260/312 (83%), Gaps = 5/312 (2%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCC--GCTTTGGCGGGTCGCCGGCTTCTT 77 || |||||||| | |||||||| |||| | || || | | | | ||| ||||||| Sbjct 31547 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGCATCCTCCG-TGGCCAGCTTCTT 31489 Query 78 AGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCC 136 ||||||||||| | || || | | |||||||||||||||||||||||||||||||||| Sbjct 31488 AGAGGGACTATGGCCTTTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCC 31429 Query 137 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGG 196 |||||||||||||||||||||||||||||||||| | |||||||| || |||||| Sbjct 31428 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTGG 31369 Query 197 CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256 ||| ||||| |||||||||| | ||| | ||||| |||||||||| |||||||||| Sbjct 31368 CCGACAGGTCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCAATTG 31310 Query 257 TTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCC 316 ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| ||||||| Sbjct 31309 TTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCC 31250 Query 317 CTGCCCTTTGTA 328 |||||||||||| Sbjct 31249 CTGCCCTTTGTA 31238 Score = 288 bits (318), Expect = 2e-75 Identities = 254/312 (81%), Gaps = 5/312 (2%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCC--GCTTTGGCGGGTCGCCGGCTTCTT 77 || |||||||| | |||||||| |||| | || || | | | | ||| ||||||| Sbjct 25935 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGCATCCTCCG-TGGCCAGCTTCTT 25877 Query 78 AGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCC 136 ||||||||||| | || || | | |||||||||||||||||||||||||||||||||| Sbjct 25876 AGAGGGACTATGGCCTTTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCC 25817 Query 137 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGG 196 |||||||||||||||||||||||||||||||||| | |||||||| || |||||| Sbjct 25816 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTGG 25757 Query 197 CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256 ||| ||||| |||||||||| | ||| | ||||| |||||||||| |||||||||| Sbjct 25756 CCGACAGGTCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCAATTG 25698 Query 257 TTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCC 316 ||| |||||||| |||||| ||||||||||| | ||||||| | || ||||| ||||||| Sbjct 25697 TTGGTCTTCAACAAGGAATTCCTAGTAAGCGTGAGTCATCAACTCGTGTTGACTACGTCC 25638 Query 317 CTGCCCTTTGTA 328 || | ||||||| Sbjct 25637 CTACACTTTGTA 25626 >seq31675 Length=711 Score = 295 bits (326), Expect = 1e-77 Identities = 261/321 (81%), Gaps = 5/321 (2%) Strand=Plus/Minus Query 11 CTATCGAGGGAGCGAGACCTTAACCTGCTAAATAGCCAGGCCC--GCTTTGGCGGGTCGC 68 ||| ||| | | |||||||| | |||||||| |||| | || || | | | | || Sbjct 608 CTAGCGATGCAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGCATCCTCCG-TGGC 550 Query 69 CGGCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCT 127 | |||||||||||||||||| | || || | | |||||||||||| |||||||||||| Sbjct 549 CAGCTTCTTAGAGGGACTATGGCCTTTTAGGCCAAGGAAGTTTGAGGTAATAACAGGTCT 490 Query 128 GTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCA 187 ||||||||||||||||||||||||||||||||||||||||||| | |||||||| | Sbjct 489 GTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTA 430 Query 188 TCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCA 247 | ||||||||| ||||| |||||||||| | ||| | ||||| |||||||||| || Sbjct 429 TAGCCTTGGCCGACAGGTCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCA 371 Query 248 TTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307 |||||||| ||| ||||||||||||||| ||||||||||||| ||||||| | || |||| Sbjct 370 TTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAACTCGTGTTG 311 Query 308 ATTACGTCCCTGCCCTTTGTA 328 | ||||||||| | ||||||| Sbjct 310 ACTACGTCCCTACACTTTGTA 290 >seq300 Length=54110 Score = 219 bits (242), Expect = 8e-55 Identities = 212/267 (79%), Gaps = 4/267 (1%) Strand=Plus/Plus Query 64 GTCGCCGGCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACA 122 || ||| |||||||| |||| ||| | || || | | | || | | ||||||||||| Sbjct 4484 GTGGCCAGCTTCTTAAAGGGGTTATAGCCTTTTAGACCAAGAAA-TATAAGGCAATAACA 4542 Query 123 GGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGA 182 ||| ||||||||||||||||||||||||||||||| | |||||||| | | |||| | Sbjct 4543 GGTATGTGATGCCCTTAGATGTTCTGGGCCGCACGTGGGCTACACTAATTTATTCAACAA 4602 Query 183 GTTCATCACCTTGGCCGGAAG-GTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGAT 241 || || ||||||||| || ||| |||||||||| | ||| | ||||| || |||| Sbjct 4603 GTCTATAGCCTTGGCCGAAAAAGTCCGGGTAATCTT-TGAAATTTCATCGTGATGTGGAT 4661 Query 242 AGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCAC 301 ||| |||||||||| ||| ||||||| ||||||| |||||||||| || |||||| || | Sbjct 4662 AGATCATTGCAATTGTTGGTCTTCAATGAGGAATTCCTAGTAAGCACGAGTCATCGGCTC 4721 Query 302 GCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||| ||||||| ||||||||||| Sbjct 4722 GTGTTGACTACGTCCTTGCCCTTTGTA 4748 >seq6707 Length=20218 Score = 208 bits (230), Expect = 1e-51 Identities = 204/259 (79%), Gaps = 3/259 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||||||||| | || || | | |||||||||||||||||| |||| |||| Sbjct 13250 CTTCTTAGAGGGACTATGGTCTTTTAGGCCAAGGAAGTTTGAGGCAATAATAGGTATGTG 13309 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||| ||| | ||| | ||||||| ||| | |||| ||| || Sbjct 13310 ATGCCCTTAGATGTTCCGGGTCACACACACGCTACAATGATGTATCCAAGGAGCCTATAG 13369 Query 191 CCTTGGCCGGA-AGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 | ||||| | | ||||| |||||||||| | ||| | ||||| |||| ||||| |||| Sbjct 13370 CATTGGCGGAACAGGTCCGGGTAATCTT-TGAAATTTCATCGTGATGGGTATAGATCATT 13428 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||||| ||| |||||||||||||| ||||||||| | | |||||| || || |||| Sbjct 13429 GCAATTGTTGGTCTTCAACGAGGAAATCCTAGTAAGTGTGAGTCATCTGCTCGTTTTGAC 13488 Query 310 TACGTCCCTGCCCTTTGTA 328 ||| | |||||||| |||| Sbjct 13489 TACATGCCTGCCCTATGTA 13507 >seq6113 Length=4549 Score = 188 bits (208), Expect = 1e-45 Identities = 149/176 (85%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 154 CACGC-GCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTA 212 ||||| |||||||||||| | |||||||| || ||||||||| ||||| ||||| Sbjct 4434 CACGCAGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTGGCCGACAGGTCCGGGTA 4375 Query 213 ATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGG 272 ||||| | ||| | ||||| |||||||||| |||||||||| ||| |||||||||||| Sbjct 4374 ATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCAATTGTTGGTCTTCAACGAGG 4316 Query 273 AATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| ||||||||||||| ||||||||| |||||||| ||||||||||||||||||| Sbjct 4315 AATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTA 4260 >seq6327 Length=6052 Score = 147 bits (162), Expect = 4e-33 Identities = 188/263 (71%), Gaps = 26/263 (10%) Strand=Plus/Minus Query 65 TCGCCGGCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAG 123 ||||| ||||||||||| |||| | || || | | ||| |||||||||||||||| Sbjct 3959 TCGCCAGCTTCTTAGAGAGACTCTGTCCTTTTAGGCCAAGGATATTTGAGGCAATAACAG 3900 Query 124 GTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAG 183 ||| |||||||||||||||||| ||| | ||| || Sbjct 3899 GTCAATGATGCCCTTAGATGTTCAGGGTCATACG------------------------AG 3864 Query 184 TTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAG 243 | || | ||||||| ||||| |||| || || | ||| | ||||| ||||||| | Sbjct 3863 TCTATAGCTTTGGCCGACAGGTCCGGGTGATGTT-TGAAATTTCATCGTGATGGGGATTG 3805 Query 244 AGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGC 303 | |||||||||| ||| ||||||||||||| |||||||||||| ||||||| | ||| Sbjct 3804 ATCATTGCAATTTTTGGTCTTCAACGAGGATCTCCTAGTAAGCGCAAGTCATCACCTCGC 3745 Query 304 GTTGATTACGTCCCTGCCCTTTG 326 ||||| || ||||||||||||| Sbjct 3744 GTTGACTATATCCCTGCCCTTTG 3722 >seq28513 Length=21937 Score = 125 bits (138), Expect = 1e-26 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251 |||||| | |||||| | ||||| | | ||| | || || |||||||||| |||||| Sbjct 17122 CTTGGCTGATAGGTCTTGATAATCATTTGAAATTTCATCATGATGGGGATAGATCATTGC 17063 Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTA 311 |||| ||| |||| ||| |||||| |||| |||||| | ||||||||| ||||||| || Sbjct 17062 AATTTTTGGTCTTTAACAAGGAATTCCTAATAAGCGTGAGTCATCAGCTTGCGTTGACTA 17003 Query 312 CGTCCCTGCCCTTTGTA 328 |||||||||| |||||| Sbjct 17002 CGTCCCTGCCTTTTGTA 16986 >seq16911 Length=19199 Score = 89.7 bits (98), Expect = 1e-15 Identities = 80/99 (81%), Gaps = 1/99 (1%) Strand=Plus/Plus Query 231 GTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGG-AATGCCTAGTAAGCGCG 289 ||| |||||||||| |||| |||| ||| |||||||||||| | ||||||||| | | Sbjct 4832 GTGATGGGGATAGATTATTGTAATTGTTGGTCTTCAACGAGGCTCTTCCTAGTAAGAGTG 4891 Query 290 TGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||||| | |||| |||||||| || |||||||| Sbjct 4892 AGTCATCAGCTCATGTTGGTTACGTCCATGTCCTTTGTA 4930 >seq28970 Length=75296 Score = 86.0 bits (94), Expect = 1e-14 Identities = 83/103 (81%), Gaps = 4/103 (4%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGCTC--AAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||||||| || |||||| |||| | ||||| | || ||||||||||||| |||| | Sbjct 23335 GCTTCTTAAAGAGACTATAGGCTTTTAGGCCGAAGAAA-TTTGAGGCAATAATAGGTTTC 23393 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC 171 | | ||||||| ||||||| ||||||||| || ||||||| || Sbjct 23394 TAACGCCCTTAAATGTTCTTGGCCGCACGAGC-CTACACTTAC 23435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946741583616