Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq5077 93.3 8e-17 >seq5077 Length=55412 Score = 93.3 bits (102), Expect = 8e-17 Identities = 170/243 (70%), Gaps = 12/243 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| || || ||| ||||| || |||| ||| | ||| | || Sbjct 54374 GGTGGATACCTAGGCACCTAGAGACGAGGAAGGTCGCAGTAAGCGACGAAATGCTTCAGG 54315 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| ||| Sbjct 54314 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCAA- 54263 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 ||||| | ||||| |||| | | |||| || ||| | | |||||||||||| ||| Sbjct 54262 -ATTGC-TATTGAATCCATATGCAAGCAAGAGACAAC-CTGAAAACTGAAACATCCTAGT 54206 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 | | ||||||||||| ||| | |||||||| ||||| ||| ||||||||| || || Sbjct 54205 AATTAGAGGAAAAGAAAACAAAAGCGATTCCCATAGTAGCGGCAAGCGAAATGAGAGCAG 54146 Query 249 CCT 251 ||| Sbjct 54145 CCT 54143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 917955521952