Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq26341 394 3e-107 seq30339 331 3e-88 seq16640 224 3e-56 seq300 217 5e-54 seq11510 167 8e-39 seq15360 158 4e-36 seq28434 118 3e-24 seq3701 113 1e-22 seq15067 96.9 1e-17 seq17643 93.3 1e-16 >seq26341 Length=24283 Score = 394 bits (436), Expect = 3e-107 Identities = 292/337 (87%), Gaps = 7/337 (2%) Strand=Plus/Minus Query 98 CCCACCTGACAATGTCATCAACCCGGATCGGCCCGC-GAAGGACCTTAACGCCAGAAA-A 155 |||||||||||||||| || ||||||||||||||| ||| | |||| ||| || | Sbjct 24125 CCCACCTGACAATGTCTTCCGCCCGGATCGGCCCGCCGAACGGCCTTTGGTCCAAAAGGA 24066 Query 156 TGGTCGGTGAAGACCAGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGT 215 || | ||| || |||| |||| || ||||||||| |||| ||| |||||||| Sbjct 24065 GGGGCAGTGCC--CCGCCTCCGATTCACGGAATAAGTAAAATAACGTTAAAAGTAGTGGT 24008 Query 216 ATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAG 275 |||||| || |||| | |||||||||||| ||||||||||||||||||||||||||| Sbjct 24007 ATTTCAATTTTGCCGGA---GCTCCCACTTATACTACACCTCTCAAGTCATTTCACAAAG 23951 Query 276 TCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTC 335 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 23950 TCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTTCGCCAAGCCCGTTC 23891 Query 336 CCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTC 395 ||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||| Sbjct 23890 CCTTGGCTGTGGTTTCGCTGGATAGTAGACAGCGACAGTGGGAATCTCGTTAATCCATTC 23831 Query 396 ATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 ||||||||||||||||||||||||| | ||||||||| Sbjct 23830 ATGCGCGTCACTAATTAGATGACGATGAATTTGGCTA 23794 >seq30339 Length=45269 Score = 331 bits (366), Expect = 3e-88 Identities = 218/239 (91%), Gaps = 4/239 (2%) Strand=Plus/Minus Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||| ||||||||||||||||||| |||||||||| || |||||| |||||||||||| | Sbjct 36808 CAGGATCTTCTTTCCCCGCTGATTTCGCCAAGCCCATTTCCTTGGTTGTGGTTTCGCTGG 36749 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||||||| ||| |||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 36748 ATAGTAGACAGGATCAGTGGGAATCTCGTTAATCCATTTATGCGCGTTACTAATTAGATG 36689 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 ||||||| ||||||||| ||| ||||||||||||||||||| |||||||||||||||| Sbjct 36688 ACGAGGCGTTTGGCTACTTTA--AGAGTCATAGTTACTCCCGTTGTTTACCCGCGCTTGG 36631 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 |||||||||||||||||| |||||||||||||||||||||||||||||||| | |||| Sbjct 36630 TTGAATTTCTTCACTTTG--ATTCAGAGCACTGGGCAGAAATCACATTGCGTGAGCATC 36574 >seq16640 Length=3287 Score = 224 bits (248), Expect = 3e-56 Identities = 135/142 (95%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1790 CAATAGGGTCTTCTTTCCCCGCTGATTTCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 1849 Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 | ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1850 TGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCAATCATGCGCGTCACTAATTAG 1909 Query 414 ATGACGAGGCATTTGGCTACCT 435 ||||||||||||||| | |||| Sbjct 1910 ATGACGAGGCATTTGACCACCT 1931 Score = 113 bits (124), Expect = 1e-22 Identities = 88/104 (85%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||| ||||||| ||| | ||||||||||||||||||| Sbjct 1676 CTTTTGTTCCACACGAGATTTATGTTCTCGTGGAGCTCATCTTAGGACACCTGCGTTATC 1735 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAAT 110 |||| ||||||||| |||||||||||||||||||| ||||||| Sbjct 1736 TTTTA-CAGATGTGCTGCCCCAGCCAAACTCCCCACTTGACAAT 1778 >seq300 Length=54110 Score = 217 bits (240), Expect = 5e-54 Identities = 154/179 (86%), Gaps = 13/179 (7%) Strand=Plus/Minus Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||| Sbjct 6720 ATAGTAGACAGGGATAGTGGGAATCTCGTTAATCCATTCATGAACGTCACTAATTAGATG 6661 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 |||||||||||||||||||||||| | ||||||||||||| ||||||| Sbjct 6660 ACGAGGCATTTGGCTACCTTAAGAAAATCATAGTTACTCC-------------CGCTTGG 6614 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||||||||||||||||| || |||| |||| ||||||||||| | |||| Sbjct 6613 TTGAATTTCTTCACTTTGACATTCAGAACATTGGGAAGAAGTCACATTGCGTGAGCATC 6555 >seq11510 Length=33421 Score = 167 bits (184), Expect = 8e-39 Identities = 113/127 (89%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 28712 CTTTTGTTCCACACGAGATTTCTGTTCTCGCTGAGCTCATCTTAGGACACCTGCGTTATC 28771 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 28772 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 28831 Query 127 GGCCCGC 133 ||||||| Sbjct 28832 GGCCCGC 28838 >seq15360 Length=21214 Score = 158 bits (174), Expect = 4e-36 Identities = 185/246 (75%), Gaps = 7/246 (3%) Strand=Plus/Minus Query 49 TAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACA 108 |||| || ||||||||| ||||||||||||| || | ||||||||||| ||| |||||| Sbjct 10968 TAGGGCAACTGCGTTATTTTTTAACAGATGTGGCGGCTCAGCCAAACTCTCCATCTGACA 10909 Query 109 ATGTCATCAACCCGGATCGGCCCGC-GAAGGACCTTAACGCCAGAAAATGGTCGGTGAAG 167 |||| | |||||| | ||||| ||| | ||| ||| || || | | | Sbjct 10908 ATGTTTTTCGTCCGGATTGACCCGCCGAACGGTCTTTGGTCCAAAAGGAGG--GATAGTG 10851 Query 168 ACCAGT-TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGC 226 || | |||| |||| || ||||||||| |||||||| |||||| |||||| || Sbjct 10850 CCCTGCCTCCGATTCACGGAATAAGTAAAATAACGATAAAAGTAGTGACATTTCAATTTT 10791 Query 227 GCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAG 286 | || | |||||||||||| |||||||| |||||||||||||| |||||||||| || Sbjct 10790 GTCGGA---GCTCCCACTTATATTACACCTCCCAAGTCATTTCACAGAGTCGGACTAAAG 10734 Query 287 TCAAGC 292 |||||| Sbjct 10733 TCAAGC 10728 >seq28434 Length=7437 Score = 118 bits (130), Expect = 3e-24 Identities = 80/90 (89%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 446 ATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGC 505 |||||||||| |||| |||||||||||||||||| |||||||||| |||||||||| || Sbjct 7258 ATAGTTACTCTCGCCTTTTACCCGCGCTTGGTTGGATTTCTTCACGTTGACATTCAAAGG 7199 Query 506 ACTGGGCAGAAATCACATTGCGTCAACATC 535 ||| |||||||||||| |||||| | |||| Sbjct 7198 ACTAGGCAGAAATCACGTTGCGTGAGCATC 7169 >seq3701 Length=3308 Score = 113 bits (124), Expect = 1e-22 Identities = 229/338 (68%), Gaps = 14/338 (4%) Strand=Plus/Minus Query 50 AGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAA 109 |||| || |||||||| || |||| |||| || || ||| ||| | | |||||||||| Sbjct 794 AGGATACATGCGTTATATTTCAACAAATGTATCGTCCTAGCTAAATTTCTCACCTGACAA 735 Query 110 TGTCATCAACCCGGATCGGCCCGCGAAG-GACCTTAACGCCAGAAAATGGTCGGTGAAGA 168 | | | | ||||| | ||||| || | || ||| ||| | | | | Sbjct 734 TATTTTTTATTCGGATTGACCCGCCAAACGGTCTGTGGACCA-AAAGGAGAGGCAGTACC 676 Query 169 CCAGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGC 228 ||| |||| |||| | | ||||||||| ||| ||| || | ||||| | || | Sbjct 675 CCACCTCCGATTCACTAAATAAGTAAAACTACGTTAAAAATAAAGATATTTTAATTTATC 616 Query 229 CGAAACGGCTCCCACTTATTCTACACCTC--------TCAAGTCATTTCACAAAGTCGGA 280 || ||||| |||||| ||||||| |||| |||||| ||||||| | Sbjct 615 AGA----GCTCCTACTTATATCACACCTCCCAAATCATCAAATCATTTTACAAAGTAAAA 560 Query 281 CTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTG 340 ||| ||| ||||||||| ||| | |||||| ||| ||| ||||| || || |||| Sbjct 559 CTAAAGTTTAGCTCAACAAGGTTTAATTTCCCTGCTAATTTTGCCAAACCTATTTCCTTA 500 Query 341 GCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGA 378 |||||||||||||||||||| | | ||||||||| Sbjct 499 ATTGTGGTTTCGCTAGATAGTAAACAAAAACAGTGGGA 462 >seq15067 Length=53870 Score = 96.9 bits (106), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 81 CCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCCG-CGAAGGA 139 |||| ||||||||||||||||||| |||||||| || |||||||||||| | |||| | Sbjct 30521 CCGCTCCAGCCAAACTCCCCACCTAACAATGTCTTCCGCCCGGATCGGCCTGCCGAACGG 30580 Query 140 CCTTAACGCCAGAA-AATGGTCGGTGAAGACCAGTTCCGCTTCATTGATTAAGTaaaaaa 198 |||| ||| || | || | ||| || |||| |||| || ||||||||| | Sbjct 30581 CCTTTGGTCCAAAAGGAGGGGCAGTG--TCCCGCCTCCGATTCACAGAATAAGTAAAATA 30638 Query 199 aCGATAAGGGTAGTGGTATTTCACTT 224 ||| ||| |||||||||||||| || Sbjct 30639 ACGTTAAAAGTAGTGGTATTTCAATT 30664 >seq17643 Length=15297 Score = 93.3 bits (102), Expect = 1e-16 Identities = 86/108 (80%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || | | ||| ||||| ||||| |||| | |||| |||||||| ||||| Sbjct 10279 CTTTTGTTCCAAACGAGGTTTCTATTCTCGTTGAGCTCATCTTAAGACACCTGTGTTATC 10338 Query 67 GTTTAACAGATGTGC--CGCCCCAGCCAAACTCCCCACCTGACAATGT 112 ||||||| |||||| ||||||||||||||| || ||||| |||||| Sbjct 10339 TTTTAACAAATGTGCGCCGCCCCAGCCAAACTACCTACCTGGCAATGT 10386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634408612256