Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq16640 104 4e-20 seq11510 73.4 6e-11 seq1057 73.4 6e-11 >seq16640 Length=3287 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 1353 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 1296 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| Sbjct 1295 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCC 1242 >seq11510 Length=33421 Score = 73.4 bits (80), Expect = 6e-11 Identities = 86/114 (75%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | | | | ||| | |||| Sbjct 28389 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGAGTTTAGTTGAAAACCCAGT 28332 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||| ||||||||| ||||||||||| ||||||||| ||||| ||||||| Sbjct 28331 GGCGCCTAGCTACCATGCGCTGGATTATGAATGAACGCCTATAAGTAAGAATCC 28278 >seq1057 Length=4456 Score = 73.4 bits (80), Expect = 6e-11 Identities = 91/121 (75%), Gaps = 9/121 (7%) Strand=Plus/Minus Query 2 TACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTG 61 |||||||||||||| | |||| | ||||||||| | ||| || |||| || ||||| Sbjct 3046 TACGAGAGGAACCGTTG-ATTC-GCATAATTGGTCATCGCGCTTGGCTGAAAAGCCAGTG 2989 Query 62 CCGCGAAGC--TACCATCT-----GCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||| ||| || | |||||||||| ||||||| |||||||| | ||||| Sbjct 2988 GCCCGAAGCTATACTATATCGTACGCTGGATTATAACTGAACGTCTCTAAGTTACAATCC 2929 Query 115 A 115 | Sbjct 2928 A 2928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818815921408