Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq26787 217 1e-51 seq13309 196 4e-45 >seq26787 Length=21907 Score = 217 bits (240), Expect = 1e-51 Identities = 565/848 (67%), Gaps = 30/848 (4%) Strand=Plus/Minus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || ||||| ||||||||||| | |||||||| ||| | || | ||| Sbjct 16839 ATGTACAAGAAAGCTGAAGCCTCCTTCTGGACAGCCGAGGAGGTAGATCTCTCTCAGGAC 16780 Query 61156 ATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 | ||||||| ||| | || || | || ||||| | || || | || Sbjct 16779 GTTCGCCACTGGGACGCCTTAACTGCCGACGAGCGCCACTTCATCACGCACGTCCTCGCC 16720 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATT-GGAACGTTTCGCGCAGGA 61274 ||||| ||||| || ||||| |||||| |||||| | || | |||| | |||| Sbjct 16719 TTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAATCTCGCCGGCAGGTTTAT-GAAGGA 16661 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 ||| || || | ||||||||| ||||||||||||||||| || || ||||| | || Sbjct 16660 GGTCCAGGTAGCCGAGGCGCGTGCCTTCTACGGCTTCCAGATCGCGATTGAGAACATTCA 16601 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACG 61394 ||| ||||||||||| | || |||| || ||||||| ||| | ||| || Sbjct 16600 CTCCGAGATGTACAGCCTCCTGCTCGAGACCTACATCAAGGATTCGAAAGAAAAAAGCCG 16541 Query 61395 ATTGTTCAATGCCATCGAGACGATACC-GGCG--GTGAAGCGGAAAGCGGATTGGGCCTT 61451 | ||| || ||||||||||| || ||| | ||| ||| ||| | ||||| || Sbjct 16540 CCTTTTCCGCGCAATCGAGACGATTCCTTGCGTCGCGAA---GAAGGCGCAGTGGGCGTT 16484 Query 61452 CAATTGGATCACCAGTACAACGGCTA--CATTTGGTGAACGATTGCTGGCATTTGCGGTG 61509 || |||||| || ||| | | |||| ||| || || | || || || Sbjct 16483 GAAATGGATC-----GACGGCGGGGAGTCCTTTGCTGAGCGGCTGATAGCGTTCGCCTGC 16429 Query 61510 GTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGA 61569 ||||| || | || ||| ||| || | |||| || ||| ||||||| || || Sbjct 16428 GTCGAAGGGATCTTCTTCTCCGGAAGCTTCTGCTCAATTTTCTGGCTGAAGAAGCGAGGG 16369 Query 61570 CTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGT 61629 | ||||| || ||||||||| ||| ||| |||| || || ||||| || |||| ||| Sbjct 16368 TTGATGCCTGGACTGACCTTCTCCAACGAGCTGATCTCGCGAGACGAAGGTCTGCACTGT 16309 Query 61630 GATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAA----TCGTCCGTCGGAGGAGCG 61685 ||||| || |||||| | ||| | || |||| | || | |||||||| Sbjct 16308 GATTTCGCCTGTTTGCTGT----ACGGGA--TGATGAAGATGAAGCCCAGC-GAGGAGCG 16256 Query 61686 TGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTT 61745 ||| | |||||| || || ||||| |||||| ||| ||| | ||||||| | Sbjct 16255 CGTGAAGGGGATTGTCCGCGATGCGGTGGATATCGAGAGGGAGTTTGTCTGTGACGCTCT 16196 Query 61746 GCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGC 61805 || | | | | || |||||| | | | ||| ||||| ||||| ||||| || Sbjct 16195 CCCTTGCGCGTTGGTTGGGATGAATGGGGTGTTGATGAGTCAGTACATTGAGTTTGTAGC 16136 Query 61806 CGACCGTCTGTTGGTC-GATTTGGGTATGAAGC-GGATCTATAATACGAAAAACCCATTT 61863 ||| | || ||| | | |||| || ||| ||||| || || ||||| ||| Sbjct 16135 CGATAGGTTGCTGGACTCACTTGGCTA--CAGCAAAATCTACAACGTGATCAACCCCTTT 16078 Query 61864 GATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGC 61923 |||| ||||| |||| |||||| | || ||||| ||||| |||||||| | || || Sbjct 16077 GATTGGATGGAGCTGATCTCGCTGCAAGGGAAGACCAATTTCTTCGAGAAGAGAGTCGGG 16018 Query 61924 GACTATCA 61931 || ||||| Sbjct 16017 GAGTATCA 16010 >seq13309 Length=30306 Score = 196 bits (216), Expect = 4e-45 Identities = 573/874 (66%), Gaps = 18/874 (2%) Strand=Plus/Plus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| ||||| || | || ||| |||||||| || || || || ||||||| Sbjct 5797 TGTTCCCAATCGAATACCCTCAGATCTGGGAGATGTACAAGAAAGCCGAGGCCTCCTTCT 5856 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183 |||| | |||||||| ||| | || | ||| | ||||||| ||| | || Sbjct 5857 GGACAGCCGAGGAGGTAGATCTCTCTCAGGACGTTCGCCACTGGGACGCCTTAACTGCCG 5916 Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243 || | || ||||| | || || | || ||||| ||||| || ||||| |||||| Sbjct 5917 ACGAGCGCCACTTCATCACGCACGTCCTCGCCTTCTTCGCCGCATCCGACGGCATCGTCC 5976 Query 61244 ATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCT 61303 ||||||| | | | ||| | ||||||| || ||| | ||||||||| |||| Sbjct 5977 TTGAGAATCTCGCCGGCAGGTTCATGAAGGAGGTCCAGGTGGCCGAGGCGCGTGCCTTCT 6036 Query 61304 ACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATA 61363 ||||||||||||| || || ||||| | ||||| ||||||||||| | || |||| | Sbjct 6037 ACGGCTTCCAGATCGCGATTGAGAACATTCACTCCGAGATGTACAGCCTCCTGCTCGAGA 6096 Query 61364 CGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGG 61423 | ||||||| ||| | ||| || ||||| ||| ||||| ||||| || Sbjct 6097 CCTACATCAAGGATTCGAAAGAAAAAAGCCGTCTGTTCCGTGCAATCGACACGATTCCTT 6156 Query 61424 CGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTG 61483 ||| | ||| ||| | ||||| || || |||||| | | | | | | |||| Sbjct 6157 GCGTGGCGAAGAAGGCGCAGTGGGCGTTGAAATGGATCGACGG--CGGGGAGTGC-TTTG 6213 Query 61484 GTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCG 61543 || | || | || || || || || || | || ||| ||| || | Sbjct 6214 CCGAGAGGCTGATTGCGTTCGCCTGCGTTGAAGGGATCTTCTTCTCCGGAAGCTTCTGCT 6273 Query 61544 CAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGA 61603 | || || ||| ||||||| || || | ||||| || |||||||| || ||| ||| Sbjct 6274 CGATTTTCTGGCTGAAGAAGCGCGGGTTGATGCCTGGATTGACCTTCTCGAACGAGCTGA 6333 Query 61604 TATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGG 61663 | || || ||||| ||| |||| |||||||| || ||||| | ||| | || Sbjct 6334 TCTCGCGAGACGAAGGCCTGCACTGTGATTTCGCCTGCTTGCTGT----ACGGGA--TGA 6387 Query 61664 TGAA----TCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATC 61719 |||| | || | |||||||| || | |||||| || || ||||| |||| Sbjct 6388 TGAAGATGAAGCCCAGC-GAGGAGCGCGTAAAAGGGATTGTCCGCGATGCGGTGGATATC 6446 Query 61720 GAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTA 61779 || || ||| | |||||| | || | | | | || |||||| | | || Sbjct 6447 GAGAGAGAGTTTGTCTGTGACGCGCTCCCTTGCGCGTTGGTTGGGATGAATGGGGTGCTG 6506 Query 61780 ATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGAT-TTGGGTATGAAGC- 61837 ||| ||||| ||||| ||||| ||||| | || ||| | | |||| || ||| Sbjct 6507 ATGAGTCAGTACATTGAGTTTGTAGCCGATAGGTTGCTGGACTCTCTTGGCTA--CAGCA 6564 Query 61838 GGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGA 61897 ||||| ||| || ||||||||||||| ||||| | || ||| || | || |||| Sbjct 6565 AAATCTACAATGTGACGAACCCATTTGATTGGATGGAGCTTATCTCGTTGCAAGGGAAGA 6624 Query 61898 CGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 | ||||| |||||||| | || || || ||||| Sbjct 6625 CTAATTTCTTCGAGAAGAGAGTCGGAGAGTATCA 6658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397333499112080