Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq26787 217 1e-51
seq13309 196 4e-45
>seq26787
Length=21907
Score = 217 bits (240), Expect = 1e-51
Identities = 565/848 (67%), Gaps = 30/848 (4%)
Strand=Plus/Minus
Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155
|||||||| || || ||||| ||||||||||| | |||||||| ||| | || | |||
Sbjct 16839 ATGTACAAGAAAGCTGAAGCCTCCTTCTGGACAGCCGAGGAGGTAGATCTCTCTCAGGAC 16780
Query 61156 ATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215
| ||||||| ||| | || || | || ||||| | || || | ||
Sbjct 16779 GTTCGCCACTGGGACGCCTTAACTGCCGACGAGCGCCACTTCATCACGCACGTCCTCGCC 16720
Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATT-GGAACGTTTCGCGCAGGA 61274
||||| ||||| || ||||| |||||| |||||| | || | |||| | ||||
Sbjct 16719 TTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAATCTCGCCGGCAGGTTTAT-GAAGGA 16661
Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334
||| || || | ||||||||| ||||||||||||||||| || || ||||| | ||
Sbjct 16660 GGTCCAGGTAGCCGAGGCGCGTGCCTTCTACGGCTTCCAGATCGCGATTGAGAACATTCA 16601
Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACG 61394
||| ||||||||||| | || |||| || ||||||| ||| | ||| ||
Sbjct 16600 CTCCGAGATGTACAGCCTCCTGCTCGAGACCTACATCAAGGATTCGAAAGAAAAAAGCCG 16541
Query 61395 ATTGTTCAATGCCATCGAGACGATACC-GGCG--GTGAAGCGGAAAGCGGATTGGGCCTT 61451
| ||| || ||||||||||| || ||| | ||| ||| ||| | ||||| ||
Sbjct 16540 CCTTTTCCGCGCAATCGAGACGATTCCTTGCGTCGCGAA---GAAGGCGCAGTGGGCGTT 16484
Query 61452 CAATTGGATCACCAGTACAACGGCTA--CATTTGGTGAACGATTGCTGGCATTTGCGGTG 61509
|| |||||| || ||| | | |||| ||| || || | || || ||
Sbjct 16483 GAAATGGATC-----GACGGCGGGGAGTCCTTTGCTGAGCGGCTGATAGCGTTCGCCTGC 16429
Query 61510 GTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGA 61569
||||| || | || ||| ||| || | |||| || ||| ||||||| || ||
Sbjct 16428 GTCGAAGGGATCTTCTTCTCCGGAAGCTTCTGCTCAATTTTCTGGCTGAAGAAGCGAGGG 16369
Query 61570 CTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGT 61629
| ||||| || ||||||||| ||| ||| |||| || || ||||| || |||| |||
Sbjct 16368 TTGATGCCTGGACTGACCTTCTCCAACGAGCTGATCTCGCGAGACGAAGGTCTGCACTGT 16309
Query 61630 GATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAA----TCGTCCGTCGGAGGAGCG 61685
||||| || |||||| | ||| | || |||| | || | ||||||||
Sbjct 16308 GATTTCGCCTGTTTGCTGT----ACGGGA--TGATGAAGATGAAGCCCAGC-GAGGAGCG 16256
Query 61686 TGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTT 61745
||| | |||||| || || ||||| |||||| ||| ||| | ||||||| |
Sbjct 16255 CGTGAAGGGGATTGTCCGCGATGCGGTGGATATCGAGAGGGAGTTTGTCTGTGACGCTCT 16196
Query 61746 GCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGC 61805
|| | | | | || |||||| | | | ||| ||||| ||||| ||||| ||
Sbjct 16195 CCCTTGCGCGTTGGTTGGGATGAATGGGGTGTTGATGAGTCAGTACATTGAGTTTGTAGC 16136
Query 61806 CGACCGTCTGTTGGTC-GATTTGGGTATGAAGC-GGATCTATAATACGAAAAACCCATTT 61863
||| | || ||| | | |||| || ||| ||||| || || ||||| |||
Sbjct 16135 CGATAGGTTGCTGGACTCACTTGGCTA--CAGCAAAATCTACAACGTGATCAACCCCTTT 16078
Query 61864 GATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGC 61923
|||| ||||| |||| |||||| | || ||||| ||||| |||||||| | || ||
Sbjct 16077 GATTGGATGGAGCTGATCTCGCTGCAAGGGAAGACCAATTTCTTCGAGAAGAGAGTCGGG 16018
Query 61924 GACTATCA 61931
|| |||||
Sbjct 16017 GAGTATCA 16010
>seq13309
Length=30306
Score = 196 bits (216), Expect = 4e-45
Identities = 573/874 (66%), Gaps = 18/874 (2%)
Strand=Plus/Plus
Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123
||||||| ||||| || | || ||| |||||||| || || || || |||||||
Sbjct 5797 TGTTCCCAATCGAATACCCTCAGATCTGGGAGATGTACAAGAAAGCCGAGGCCTCCTTCT 5856
Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183
|||| | |||||||| ||| | || | ||| | ||||||| ||| | ||
Sbjct 5857 GGACAGCCGAGGAGGTAGATCTCTCTCAGGACGTTCGCCACTGGGACGCCTTAACTGCCG 5916
Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243
|| | || ||||| | || || | || ||||| ||||| || ||||| ||||||
Sbjct 5917 ACGAGCGCCACTTCATCACGCACGTCCTCGCCTTCTTCGCCGCATCCGACGGCATCGTCC 5976
Query 61244 ATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCT 61303
||||||| | | | ||| | ||||||| || ||| | ||||||||| ||||
Sbjct 5977 TTGAGAATCTCGCCGGCAGGTTCATGAAGGAGGTCCAGGTGGCCGAGGCGCGTGCCTTCT 6036
Query 61304 ACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATA 61363
||||||||||||| || || ||||| | ||||| ||||||||||| | || |||| |
Sbjct 6037 ACGGCTTCCAGATCGCGATTGAGAACATTCACTCCGAGATGTACAGCCTCCTGCTCGAGA 6096
Query 61364 CGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGG 61423
| ||||||| ||| | ||| || ||||| ||| ||||| ||||| ||
Sbjct 6097 CCTACATCAAGGATTCGAAAGAAAAAAGCCGTCTGTTCCGTGCAATCGACACGATTCCTT 6156
Query 61424 CGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTG 61483
||| | ||| ||| | ||||| || || |||||| | | | | | | ||||
Sbjct 6157 GCGTGGCGAAGAAGGCGCAGTGGGCGTTGAAATGGATCGACGG--CGGGGAGTGC-TTTG 6213
Query 61484 GTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCG 61543
|| | || | || || || || || || | || ||| ||| || |
Sbjct 6214 CCGAGAGGCTGATTGCGTTCGCCTGCGTTGAAGGGATCTTCTTCTCCGGAAGCTTCTGCT 6273
Query 61544 CAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGA 61603
| || || ||| ||||||| || || | ||||| || |||||||| || ||| |||
Sbjct 6274 CGATTTTCTGGCTGAAGAAGCGCGGGTTGATGCCTGGATTGACCTTCTCGAACGAGCTGA 6333
Query 61604 TATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGG 61663
| || || ||||| ||| |||| |||||||| || ||||| | ||| | ||
Sbjct 6334 TCTCGCGAGACGAAGGCCTGCACTGTGATTTCGCCTGCTTGCTGT----ACGGGA--TGA 6387
Query 61664 TGAA----TCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATC 61719
|||| | || | |||||||| || | |||||| || || ||||| ||||
Sbjct 6388 TGAAGATGAAGCCCAGC-GAGGAGCGCGTAAAAGGGATTGTCCGCGATGCGGTGGATATC 6446
Query 61720 GAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTA 61779
|| || ||| | |||||| | || | | | | || |||||| | | ||
Sbjct 6447 GAGAGAGAGTTTGTCTGTGACGCGCTCCCTTGCGCGTTGGTTGGGATGAATGGGGTGCTG 6506
Query 61780 ATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGAT-TTGGGTATGAAGC- 61837
||| ||||| ||||| ||||| ||||| | || ||| | | |||| || |||
Sbjct 6507 ATGAGTCAGTACATTGAGTTTGTAGCCGATAGGTTGCTGGACTCTCTTGGCTA--CAGCA 6564
Query 61838 GGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGA 61897
||||| ||| || ||||||||||||| ||||| | || ||| || | || ||||
Sbjct 6565 AAATCTACAATGTGACGAACCCATTTGATTGGATGGAGCTTATCTCGTTGCAAGGGAAGA 6624
Query 61898 CGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931
| ||||| |||||||| | || || || |||||
Sbjct 6625 CTAATTTCTTCGAGAAGAGAGTCGGAGAGTATCA 6658
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397333499112080
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