Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq44464 78.8 2e-12 seq28387 78.8 2e-12 seq44463 73.4 8e-11 seq1693 73.4 8e-11 >seq44464 Length=380861 Score = 78.8 bits (86), Expect = 2e-12 Identities = 104/143 (73%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251 ||| ||||||| |||||| ||| ||||||||||||| || |||| | |||| Sbjct 209833 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 209892 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 |||||||||| | || | ||| | |||||||| | || ||||||||||||||| Sbjct 209893 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 209952 Query 312 AATCAAACTGGGAAATAGCTCGT 334 || ||| | ||| |||||| || Sbjct 209953 AACCAAGATCGGATATAGCTGGT 209975 >seq28387 Length=32994 Score = 78.8 bits (86), Expect = 2e-12 Identities = 104/143 (73%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251 ||| ||||||| |||||| ||| ||||||||||||| || |||| | |||| Sbjct 20669 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 20610 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 |||||||||| | || | ||| | |||||||| | || ||||||||||||||| Sbjct 20609 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 20550 Query 312 AATCAAACTGGGAAATAGCTCGT 334 || ||| | ||| |||||| || Sbjct 20549 AACCAAGATCGGATATAGCTGGT 20527 >seq44463 Length=150519 Score = 73.4 bits (80), Expect = 8e-11 Identities = 208/313 (66%), Gaps = 10/313 (3%) Strand=Plus/Plus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAG---CCGAGT--GA 66 |||| |||||||||| | |||| ||| || ||||| || |||| || || | Sbjct 102425 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCCCAGCCCGG 102484 Query 67 TTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTT 126 | |||| |||||||| ||| | |||||||| ||| | | || | || |||| Sbjct 102485 GGCTCTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCATAGGT-AGTGGCTTGGTT 102543 Query 127 AAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTG 186 ||||| | ||| ||||| || ||||||||| ||| | ||||| | || || Sbjct 102544 AAGGGAAACCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTG 102599 Query 187 GCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTG 246 | ||| |||| | |||||||| ||| || |||| ||||| ||| | | Sbjct 102600 CTTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAA 102659 Query 247 ATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAA 306 |||||| |||||||| | |||||| | | ||||||| | | || |||||||||| Sbjct 102660 GTGGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAA 102719 Query 307 AGGCCAATCAAAC 319 | |||| || ||| Sbjct 102720 ATGCCACTCGAAC 102732 Score = 73.4 bits (80), Expect = 8e-11 Identities = 208/313 (66%), Gaps = 10/313 (3%) Strand=Plus/Minus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAG---CCGAGT--GA 66 |||| |||||||||| | |||| ||| || ||||| || |||| || || | Sbjct 130031 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCCCAGCCCGG 129972 Query 67 TTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTT 126 | |||| |||||||| ||| | |||||||| ||| | | || | || |||| Sbjct 129971 GGCTCTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCATAGGT-AGTGGCTTGGTT 129913 Query 127 AAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTG 186 ||||| | ||| ||||| || ||||||||| ||| | ||||| | || || Sbjct 129912 AAGGGAAACCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTG 129857 Query 187 GCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTG 246 | ||| |||| | |||||||| ||| || |||| ||||| ||| | | Sbjct 129856 CTTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAA 129797 Query 247 ATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAA 306 |||||| |||||||| | |||||| | | ||||||| | | || |||||||||| Sbjct 129796 GTGGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAA 129737 Query 307 AGGCCAATCAAAC 319 | |||| || ||| Sbjct 129736 ATGCCACTCGAAC 129724 >seq1693 Length=44973 Score = 73.4 bits (80), Expect = 8e-11 Identities = 208/313 (66%), Gaps = 10/313 (3%) Strand=Plus/Minus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAG---CCGAGT--GA 66 |||| |||||||||| | |||| ||| || ||||| || |||| || || | Sbjct 23680 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCCCAGCCCGG 23621 Query 67 TTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTT 126 | |||| |||||||| ||| | |||||||| ||| | | || | || |||| Sbjct 23620 GGCTCTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCATAGGT-AGTGGCTTGGTT 23562 Query 127 AAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTG 186 ||||| | ||| ||||| || ||||||||| ||| | ||||| | || || Sbjct 23561 AAGGGAAACCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTG 23506 Query 187 GCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTG 246 | ||| |||| | |||||||| ||| || |||| ||||| ||| | | Sbjct 23505 CTTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAA 23446 Query 247 ATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAA 306 |||||| |||||||| | |||||| | | ||||||| | | || |||||||||| Sbjct 23445 GTGGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAA 23386 Query 307 AGGCCAATCAAAC 319 | |||| || ||| Sbjct 23385 ATGCCACTCGAAC 23373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972367454208