Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq962 230 4e-58 seq40945 224 2e-56 seq40944 214 3e-53 seq40921 185 2e-44 seq5043 123 5e-26 seq37337 78.8 2e-12 >seq962 Length=2121 Score = 230 bits (254), Expect = 4e-58 Identities = 202/248 (81%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 414 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 473 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | | |||| | ||| ||||| |||||| | ||| || |||||||| Sbjct 474 GGGATAACACCACAGGAT-TCTGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGAT 532 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| ||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 533 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 592 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| ||||||||||| || |||||||||||||||||||||| |||||||| Sbjct 593 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 651 Query 311 GTTAGGGG 318 ||| |||| Sbjct 652 GTTGGGGG 659 >seq40945 Length=12103 Score = 224 bits (248), Expect = 2e-56 Identities = 201/248 (81%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 6680 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 6621 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | | |||| | ||| ||||| |||||| | ||| || |||||||| Sbjct 6620 GGGATAACACCACAGGAT-TCTGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGAT 6562 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| | ||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 6561 TAACAGGGACAATCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 6502 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| ||||||||||| || |||||||||||||||||||||| |||||||| Sbjct 6501 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 6443 Query 311 GTTAGGGG 318 ||| |||| Sbjct 6442 GTTGGGGG 6435 >seq40944 Length=45302 Score = 214 bits (236), Expect = 3e-53 Identities = 187/230 (81%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 42310 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 42251 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | | |||| | ||| ||||| |||||| | ||| || |||||||| Sbjct 42250 GGGATAACACCACAGGAT-TCTGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGAT 42192 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| ||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 42191 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 42132 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCA 300 ||||| ||| ||||||||||| || |||||||||||||||||||||| Sbjct 42131 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA 42082 >seq40921 Length=111058 Score = 185 bits (204), Expect = 2e-44 Identities = 192/248 (77%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 27350 CTATTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 27291 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | | | || | || ||||| | |||| | | | || ||||| || Sbjct 27290 GGGATAACACCACATGAT-TCTGGACCTATTGTTTTGGCCTTCGGCATCGGAGTAATAAT 27232 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 | | ||||| | ||||| | ||||| || |||||||||||||||||||||||||| Sbjct 27231 TGACAGGGACAACTGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 27172 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| ||||||||||| || |||| ||||||||||||||||| |||||||| Sbjct 27171 GAAAGACGAACAACTGCGAAAGCATTTGCCAATGATGTTTTCATTAATCA-AGAACGAAA 27113 Query 311 GTTAGGGG 318 ||| |||| Sbjct 27112 GTTGGGGG 27105 >seq5043 Length=8497 Score = 123 bits (136), Expect = 5e-26 Identities = 85/95 (89%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 224 TGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAG 283 ||||||||||||||||||||||||||| ||||| ||| ||||||||||| || ||||| Sbjct 3976 TGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAG 4035 Query 284 GATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||||||||||||||| ||||||||||| |||| Sbjct 4036 GATGTTTTCATTAATCA-AGAACGAAAGTTGGGGG 4069 >seq37337 Length=17060 Score = 78.8 bits (86), Expect = 2e-12 Identities = 57/65 (88%), Gaps = 1/65 (2%) Strand=Plus/Plus Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||| ||| ||||||||||| || |||||||||||||||||||||| ||||||||||| Sbjct 9764 AGACGAACAACTGCGAAAGCCTTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTT 9822 Query 314 AGGGG 318 |||| Sbjct 9823 GGGGG 9827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914793065472