Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq44464 123 2e-26 seq29359 123 2e-26 seq37135 122 7e-26 seq44463 118 9e-25 seq1693 118 9e-25 seq41417 105 6e-21 seq12456 75.2 9e-12 >seq44464 Length=380861 Score = 123 bits (136), Expect = 2e-26 Identities = 124/160 (78%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 176301 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 176243 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 176242 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 176183 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||||| || | |||| Sbjct 176182 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 176143 >seq29359 Length=4189 Score = 123 bits (136), Expect = 2e-26 Identities = 124/160 (78%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 3715 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 3657 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 3656 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 3597 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||||| || | |||| Sbjct 3596 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 3557 >seq37135 Length=148082 Score = 122 bits (134), Expect = 7e-26 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| |||||||||| ||| | | ||| ||| ||||||| ||||||||| Sbjct 107176 CGAGTTGCAGCCTACAATCCGAACTGAGGACGAGTTTTTGGAGTTAGCTCGCCCTCGCGG 107235 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | || ||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 107236 GATCGCAATCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 107295 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 107296 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 107335 >seq44463 Length=150519 Score = 118 bits (130), Expect = 9e-25 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| |||||||||| ||| | ||| ||| ||||||| ||||||||| Sbjct 99519 CGAGTTGCAGCCTACAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 99460 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | || ||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 99459 GATCGCAATCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 99400 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 99399 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 99360 Score = 118 bits (130), Expect = 9e-25 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| |||||||||| ||| | ||| ||| ||||||| ||||||||| Sbjct 132937 CGAGTTGCAGCCTACAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 132996 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | || ||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 132997 GATCGCAATCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 133056 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 133057 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 133096 >seq1693 Length=44973 Score = 118 bits (130), Expect = 9e-25 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| |||||||||| ||| | ||| ||| ||||||| ||||||||| Sbjct 26586 CGAGTTGCAGCCTACAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 26645 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | || ||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 26646 GATCGCAATCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 26705 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 26706 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 26745 >seq41417 Length=704435 Score = 105 bits (116), Expect = 6e-21 Identities = 120/160 (75%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||| || |||||||||| ||| | | ||| ||| ||||||| |||||||| Sbjct 621663 CGAGTTGTAGCCTACAATCCGAACTGAGGAAAGGTTTTTGGAGTTAGCTCAGCCTCGCGG 621604 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | || ||| ||| |||| ||| ||||||| |||| |||||||| ||| Sbjct 621603 GATCGCAATCCTTTGTCCTGGCCAT-GTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 621545 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 621544 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 621505 >seq12456 Length=4337 Score = 75.2 bits (82), Expect = 9e-12 Identities = 64/79 (81%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142 |||||||| ||||||| ||| |||||||| ||||| |||||||| |||||| || Sbjct 2221 CCATTGTAGCACGTGTGTCGCCTAGGGCATAAGGGGCATGATGACTTGACATCATCCTCA 2280 Query 143 CCTTCCTCCGGTTTGTCAC 161 ||||||||||| || |||| Sbjct 2281 CCTTCCTCCGGCTTATCAC 2299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415820810080