Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq40944 122 9e-26 seq962 122 9e-26 seq40945 118 1e-24 >seq40944 Length=45302 Score = 122 bits (134), Expect = 9e-26 Identities = 138/181 (76%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 42310 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 42251 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | | |||| | ||| ||||| ||| || | ||| || ||||||| Sbjct 42250 GGGATAACACCACAGGAT-TCTGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 42193 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 42192 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 42133 Query 190 T 190 | Sbjct 42132 T 42132 >seq962 Length=2121 Score = 122 bits (134), Expect = 9e-26 Identities = 138/181 (76%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 414 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 473 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | | |||| | ||| ||||| ||| || | ||| || ||||||| Sbjct 474 GGGATAACACCACAGGAT-TCTGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 531 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 532 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 591 Query 190 T 190 | Sbjct 592 T 592 >seq40945 Length=12103 Score = 118 bits (130), Expect = 1e-24 Identities = 137/181 (76%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 6680 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 6621 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | | |||| | ||| ||||| ||| || | ||| || ||||||| Sbjct 6620 GGGATAACACCACAGGAT-TCTGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 6563 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| | ||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 6562 TTAACAGGGACAATCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 6503 Query 190 T 190 | Sbjct 6502 T 6502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511779458560