Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq40945 102 1e-19 seq968 102 1e-19 seq40921 87.8 3e-15 seq40916 82.4 1e-13 seq40742 78.8 2e-12 seq23985 78.8 2e-12 >seq40945 Length=12103 Score = 102 bits (112), Expect = 1e-19 Identities = 99/125 (79%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 1976 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 1919 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | | ||||||||| |||||||||||||||||||||||| || | Sbjct 1918 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 1859 Query 121 GAACG 125 || || Sbjct 1858 GAGCG 1854 >seq968 Length=8291 Score = 102 bits (112), Expect = 1e-19 Identities = 99/125 (79%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 3958 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 4015 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | | ||||||||| |||||||||||||||||||||||| || | Sbjct 4016 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 4075 Query 121 GAACG 125 || || Sbjct 4076 GAGCG 4080 >seq40921 Length=111058 Score = 87.8 bits (96), Expect = 3e-15 Identities = 96/125 (77%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||| |||||| || || ||| | | ||||||| | ||| || ||| || |||| Sbjct 22647 GTACGGGAGGAATCGTTGA-TTC-GCACAATTGGTCATCGCGTTTGGTTGAAAAGCCAGT 22590 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||| | | | ||||||||| |||||||||||||||||||||||| || | Sbjct 22589 GGCGCGAAGCTATCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCAA 22530 Query 121 GAACG 125 || || Sbjct 22529 GAGCG 22525 >seq40916 Length=1005 Score = 82.4 bits (90), Expect = 1e-13 Identities = 95/124 (77%), Gaps = 3/124 (2%) Strand=Plus/Minus Query 2 TACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTG 61 ||||||| |||||| || ||| | | |||| || | ||| || ||| | ||||| Sbjct 791 TACGAGAAGAACCGTTGA-TTC-GCACAATTAGTCATCGCGCTTGGTTGAAAAC-CAGTG 735 Query 62 CCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAG 121 |||||||||||| | | ||||||||| |||||||||||||||||||||||| || || Sbjct 734 GCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGCGCTAG 675 Query 122 AACG 125 | || Sbjct 674 AGCG 671 >seq40742 Length=98338 Score = 78.8 bits (86), Expect = 2e-12 Identities = 83/107 (78%), Gaps = 2/107 (2%) Strand=Plus/Minus Query 6 AGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGC 65 |||||||||| || ||| | | ||||||| | || ||| ||| || ||||| ||| Sbjct 92822 AGAGGAACCGTTGA-TTC-GCACAATTGGTCATCACGCTTGTTTGAGAAGTCAGTGGCGC 92765 Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 112 ||||||||| | | ||||||||| || ||||||||||| ||||||| Sbjct 92764 GAAGCTACCGTGCGTTGGATTATGACTTAACGCCTCTAACTCAGAAT 92718 >seq23985 Length=1860 Score = 78.8 bits (86), Expect = 2e-12 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 58 AGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATG 117 |||| |||||||||||| | | ||||||||| |||||||||||||||| ||||||| || Sbjct 399 AGTGGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTAAGAATCCGTG 458 Query 118 CCAGAACG 125 | ||| || Sbjct 459 CTAGAGCG 466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818847133696