Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macleaya_20cordata_20[genbank_20GCA_5F002174775.1_202017-06-07]
4,547 sequences; 377,833,576 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq3540 161 1e-37
seq464 158 2e-36
seq1992 127 3e-27
>seq3540
Length=41857
Score = 161 bits (178), Expect = 1e-37
Identities = 98/101 (97%), Gaps = 2/101 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 14805 GTACAAAGGGCAGGGACGTAGTCAACGCGAG-TTGATGACTCGCGCTTACTAGGAATT-C 14862
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCAC 101
||||||||||||||||| |||||||||||||||||||||||
Sbjct 14863 CTCGTTGAAGACCAACACTTGCAATGATCTATCCCCATCAC 14903
Score = 73.4 bits (80), Expect = 6e-11
Identities = 45/48 (94%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 198 CATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT 245
||||||| ||||||||||||||||||||| ||||||||||| ||||||
Sbjct 14898 CATCACATACCTGTTATTGCCTCAAACTTACGTGGCCTAAACGGCCAT 14945
>seq464
Length=1457561
Score = 158 bits (174), Expect = 2e-36
Identities = 111/123 (90%), Gaps = 3/123 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||| |||| |||||||| |||||| |||||||| ||||||||||||||| |
Sbjct 847538 GTACAAAGGGCAAGGACATAGTCAACACGAGCT-GATGACTCACGCTTACTAGGAATT-C 847595
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAA-TTTCAAAGATT 119
|||||||||||||||||||| |||||||||||||| |||||||| ||| |||| | ||||
Sbjct 847596 CTCGTTGAAGACCAACAATTACAATGATCTATCCCTATCACGATAAAATTTTCGAGGATT 847655
Query 120 ACC 122
|||
Sbjct 847656 ACC 847658
>seq1992
Length=187634
Score = 127 bits (140), Expect = 3e-27
Identities = 124/159 (78%), Gaps = 7/159 (4%)
Strand=Plus/Minus
Query 87 ATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGACCTGTCGGCCAAGG-----T 141
|| |||| |||||||||||||||||| |||| |||| | || |||| | | |
Sbjct 50843 ATATATCTCCATCACGATGAAATTTCGAAGAATACCAGAGTAAGTAGGCCGATGCCTGAT 50784
Query 142 G--ATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCA 199
| ||| ||| |||| ||||||| | | | |||||||| ||||||||||| ||||||||
Sbjct 50783 GCTATATACTTGTTGTGTACATCAATTTCGTGCGCGTGCAGCCCAGAACATTTAAGGGCA 50724
Query 200 TCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238
| ||| || |||| |||||||||||||||||| ||||||
Sbjct 50723 TTACATACATGTTGTTGCCTCAAACTTCCGTGACCTAAA 50685
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751966875105
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |