Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macleaya_20cordata_20[genbank_20GCA_5F002174775.1_202017-06-07] 4,547 sequences; 377,833,576 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq3540 161 1e-37 seq464 158 2e-36 seq1992 127 3e-27 >seq3540 Length=41857 Score = 161 bits (178), Expect = 1e-37 Identities = 98/101 (97%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 14805 GTACAAAGGGCAGGGACGTAGTCAACGCGAG-TTGATGACTCGCGCTTACTAGGAATT-C 14862 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCAC 101 ||||||||||||||||| ||||||||||||||||||||||| Sbjct 14863 CTCGTTGAAGACCAACACTTGCAATGATCTATCCCCATCAC 14903 Score = 73.4 bits (80), Expect = 6e-11 Identities = 45/48 (94%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 198 CATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT 245 ||||||| ||||||||||||||||||||| ||||||||||| |||||| Sbjct 14898 CATCACATACCTGTTATTGCCTCAAACTTACGTGGCCTAAACGGCCAT 14945 >seq464 Length=1457561 Score = 158 bits (174), Expect = 2e-36 Identities = 111/123 (90%), Gaps = 3/123 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||| |||| |||||||| |||||| |||||||| ||||||||||||||| | Sbjct 847538 GTACAAAGGGCAAGGACATAGTCAACACGAGCT-GATGACTCACGCTTACTAGGAATT-C 847595 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAA-TTTCAAAGATT 119 |||||||||||||||||||| |||||||||||||| |||||||| ||| |||| | |||| Sbjct 847596 CTCGTTGAAGACCAACAATTACAATGATCTATCCCTATCACGATAAAATTTTCGAGGATT 847655 Query 120 ACC 122 ||| Sbjct 847656 ACC 847658 >seq1992 Length=187634 Score = 127 bits (140), Expect = 3e-27 Identities = 124/159 (78%), Gaps = 7/159 (4%) Strand=Plus/Minus Query 87 ATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGACCTGTCGGCCAAGG-----T 141 || |||| |||||||||||||||||| |||| |||| | || |||| | | | Sbjct 50843 ATATATCTCCATCACGATGAAATTTCGAAGAATACCAGAGTAAGTAGGCCGATGCCTGAT 50784 Query 142 G--ATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCA 199 | ||| ||| |||| ||||||| | | | |||||||| ||||||||||| |||||||| Sbjct 50783 GCTATATACTTGTTGTGTACATCAATTTCGTGCGCGTGCAGCCCAGAACATTTAAGGGCA 50724 Query 200 TCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 | ||| || |||| |||||||||||||||||| |||||| Sbjct 50723 TTACATACATGTTGTTGCCTCAAACTTCCGTGACCTAAA 50685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751966875105