Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macleaya_20cordata_20[genbank_20GCA_5F002174775.1_202017-06-07] 4,547 sequences; 377,833,576 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq4421 232 3e-58 seq446 232 3e-58 seq3540 120 1e-24 seq466 111 7e-22 seq173 105 3e-20 seq4507 104 1e-19 seq4202 102 3e-19 seq4456 91.5 6e-16 >seq4421 Length=404792 Score = 232 bits (256), Expect = 3e-58 Identities = 224/283 (79%), Gaps = 5/283 (2%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-- 462 |||||||||||| ||||||||||||||||||| |||| | ||||||| ||| | Sbjct 301224 CGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCCACGGGCGAGCA 301165 Query 463 AAACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGG-TGCACCATCG 520 |||||||| | || || ||| ||| || || | ||| ||||| |||||| || Sbjct 301164 AAACCCGTAAGGCGCAAGGAAGCTGACTGGCGG-GATCCCCCTCGAGGGCTGCACCGCCG 301106 Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 ||||| | ||| | | || || || |||| |||||||| |||| ||||||||||||| Sbjct 301105 ACCGACCTAGATCTTCTGAGAAGGGTTCGAGTGAGAGCATACCTGTCGGGACCCGAAAGA 301046 Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 ||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| Sbjct 301045 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGA 300986 Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 300985 TACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 300943 >seq446 Length=532606 Score = 232 bits (256), Expect = 3e-58 Identities = 224/283 (79%), Gaps = 5/283 (2%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-- 462 |||||||||||| ||||||||||||||||||| |||| | ||||||| ||| | Sbjct 324950 CGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCCACGGGCGAGCA 324891 Query 463 AAACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGG-TGCACCATCG 520 |||||||| | || || ||| ||| || || | ||| ||||| |||||| || Sbjct 324890 AAACCCGTAAGGCGCAAGGAAGCTGACTGGCGG-GATCCCCCTCGAGGGCTGCACCGCCG 324832 Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 ||||| | ||| | | || || || |||| |||||||| |||| ||||||||||||| Sbjct 324831 ACCGACCTAGATCTTCTGAGAAGGGTTCGAGTGAGAGCATACCTGTCGGGACCCGAAAGA 324772 Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 ||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| Sbjct 324771 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGA 324712 Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 324711 TACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 324669 Score = 163 bits (180), Expect = 1e-37 Identities = 135/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 ||| ||||||| |||||||||||||||||| | || ||| |||||||| | || || || Sbjct 326959 TCGGCGAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCGGGCGGTAAATTCCGTCCAAGGC 327018 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 |||||| ||| |||||||||||||| ||||||| | || ||||||||||||| |||| Sbjct 327019 TAAATACCGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTT 327078 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 327079 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 327123 >seq3540 Length=41857 Score = 120 bits (132), Expect = 1e-24 Identities = 107/133 (80%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 ||| ||||||| |||||||||||||| ||| | || |||| |||||||| | || || || Sbjct 13717 TCGGCGAGTCGGGTTGTTTGGGAATGTAGCCCAAAGTGGGCGGTAAATTCCGTCCAAGGC 13658 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 |||||| ||| |||||||||||| | |||| || |||| ||||||||||||| |||| Sbjct 13657 TAAATACCGGCGAGAGACCGATAGTGAACAAATACCGTGAGGGAAAGATGAAAAGGACTT 13598 Query 155 TGGAAAGAGAGTT 167 | || ||| ||| Sbjct 13597 T--AACGAGGGTT 13587 >seq466 Length=3133871 Score = 111 bits (122), Expect = 7e-22 Identities = 81/94 (86%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 590 ATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGT 649 |||||||| ||| ||||| ||||||||||||||||||||| ||||||| | ||| ||| Sbjct 857487 ATGCCTGAGCGGGGCGAAGCTAGAGGAAACTCTGGTGGAGGCCCGCAGCGATACTGACGT 857428 Query 650 GCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||||| ||||| | |||||||||||||||| Sbjct 857427 GCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 857394 >seq173 Length=291097 Score = 105 bits (116), Expect = 3e-20 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 56 GAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGA 115 ||||||||| | || ||| ||||||| | || || |||||||| ||| ||||||||| Sbjct 91257 GAATGCAGCCCAAAGCGGGCAGTAAATTCCGTCCAAGGCTAAATACCGGCGAGAGACCGA 91316 Query 116 TAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGT 166 ||||| ||||||| | || ||||||||||||| |||||| ||||||||| Sbjct 91317 TAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAAAAGAGAGT 91367 >seq4507 Length=204731 Score = 104 bits (114), Expect = 1e-19 Identities = 80/94 (85%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 ||||||||||| |||||||||||||||| | | ||| ||| ||||||| | ||||| || Sbjct 69099 TCGACGAGTCGGGTTGTTTGGGAATGCAAC-CCAAAGAGGACGTAAATTCCATCTAAGGC 69157 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTA 128 ||||||| ||| ||| |||||||||| ||||||| Sbjct 69158 TAAATATCGGCGAGAAACCGATAGCGAACAAGTA 69191 >seq4202 Length=527908 Score = 102 bits (112), Expect = 3e-19 Identities = 154/215 (72%), Gaps = 13/215 (6%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGT-CA 463 ||||||||||| ||||||||||||||||||| |||| | ||||||| ||||| || Sbjct 86617 CGGCCCGTCTTAAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCCACGGGTGAGCA 86676 Query 464 AACCCGTGCGCGTAA--TGAAAGTGAACGGA--GGTGGGAACCCGTGA---GGGTGCACC 516 || | |||| || ||| | | || || |||| ||| | || |||||| Sbjct 86677 AAATCT-----GTAAGGTGCAAGGAAGCTGACTGGCGGGATCCCCCTAAAGGGCTGCACC 86731 Query 517 ATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGA 576 |||| || | ||| | | || || || |||| |||||||| ||| || |||||| Sbjct 86732 GCCGACTGACCTAGATCTTCTGAGAAGGGTTCGAGTGAGAGCATACATGTCGGAACCCGA 86791 Query 577 AAGATGGTGAACTATGCCTGAATAGGGTGAAGCCA 611 ||||||||||||||||||||| || ||||||| Sbjct 86792 AAGATGGTGAACTATGCCTGAGCGGGCCGAAGCCA 86826 >seq4456 Length=529079 Score = 91.5 bits (100), Expect = 6e-16 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||||||||||||||||| ||||||| | ||| ||||||||||| ||||| | |||||| Sbjct 355669 GGAAACTCTGGTGGAGGCCCGCAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGT 355610 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 355609 ATAGGGGCGA 355600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079902466850