Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macleaya_20cordata_20[genbank_20GCA_5F002174775.1_202017-06-07] 4,547 sequences; 377,833,576 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq93 212 2e-52 seq4486 149 2e-33 seq246 136 1e-29 seq419 98.7 3e-18 >seq93 Length=428775 Score = 212 bits (234), Expect = 2e-52 Identities = 248/335 (74%), Gaps = 0/335 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||| ||||||||| ||||||||||||||||||| || ||| ||| Sbjct 129502 TATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGC 129443 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | |||||||||||||| | ||| || | | ||| | | ||| Sbjct 129442 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCTGT 129383 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||||| ||||| |||| ||| || | | ||| | || |||| | || Sbjct 129382 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGG 129323 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||| | ||| ||| |||||||||||||| || | | ||||||||| || Sbjct 129322 GGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGG 129263 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||| ||| | ||||| |||||||| || | |||||||| ||||||| || | Sbjct 129262 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGG 129203 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 |||||||||||| ||||||| ||| |||||||| Sbjct 129202 GATTAGATACCCCAGTAGTCCTAGCCGTAAACGAT 129168 >seq4486 Length=978847 Score = 149 bits (164), Expect = 2e-33 Identities = 220/312 (71%), Gaps = 0/312 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||| | ||||||||| || |||| ||||| ||| | || ||| ||| Sbjct 269674 TATCTGGGGAATAAGTATCGGCTAACTCTGTACCAGTAGCCGTGGTGAGACAGAGGATGC 269615 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | ||||||||| |||| | ||| || | | ||| | ||| Sbjct 269614 AAGCGTTATCCGGAATGATTGGGCGTAAGGCGTATGTAGGTGGCTTTTCAAGTCCACTGT 269555 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||||| ||||| ||||| ||| | | | ||| | || |||| | || Sbjct 269554 CAAATCCCAGGGCTCAACCTTGGACAGGTGGTGGAAACTACCATGCTGGAGTACGGTAGG 269495 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||| | ||| ||| |||| |||| |||| || | | |||||||||||| Sbjct 269494 GGCAGAGGGAATTTCCGGTGAAGCGGTGAGATGCTTAGAGATCCGAAAGAACACCAATGG 269435 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||| ||| | ||||| ||| |||| || | |||||||| |||||| || | Sbjct 269434 CGAAAGCACTCTGCTGGGCCGACATTGACACTGAGAGACGAAAGCTAAGGGAGCGAATGG 269375 Query 303 GATTAGATACCC 314 |||||||||||| Sbjct 269374 GATTAGATACCC 269363 >seq246 Length=103002 Score = 136 bits (150), Expect = 1e-29 Identities = 232/330 (70%), Gaps = 6/330 (2%) Strand=Plus/Plus Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70 ||||||||| | | ||||| | ||||||||||| |||| | ||| ||||| | ||| Sbjct 83290 GAATAAGCATCTGTTAACTCTATACCAGCAGCCGCAGTAAGTCAGAGGATGCAAACATTA 83349 Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCC 130 || ||| | ||||||||||||| | ||| || | | ||| | ||| ||||||| Sbjct 83350 TTCAAAATGATTGGGCGTAAAGCGACTGTAGGTGGCTTTTCAAGTTCGCTGTCAAATCCC 83409 Query 131 CGGGCTTAACCTGGGAATTGCATTTGTGACTGC-ACGACTAGAGTGTGTCAGAGGGGGGT 189 ||||| |||| ||| || | ||| | | || | |||| | || ||| | Sbjct 83410 AGGGCTCAACCCTGGACAGGCGGTGAAAACTACCAAGA-TGGAGTACGGTAG-GGGCAGA 83467 Query 190 GGAA--TTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAG 247 |||| || || ||| || |||||||| ||||| || | | |||||||||||||||| Sbjct 83468 GGAAATTTTCA-GTGGAGTGGTGAAATGTGTAGAGATTGGAAAGAACACCAATGGCGAAA 83526 Query 248 GCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTA 307 ||| | ||||| |||||||| || | |||||||| ||||| | || |||||| Sbjct 83527 GCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGATCGAATGGGATTA 83586 Query 308 GATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||| ||||||| ||| |||| ||| Sbjct 83587 GATACCCCAGTAGTCCTAGCCGTAAATGAT 83616 >seq419 Length=1766526 Score = 98.7 bits (108), Expect = 3e-18 Identities = 141/197 (72%), Gaps = 5/197 (3%) Strand=Plus/Plus Query 200 GTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGG 259 ||| ||| |||||||||||||| || | | ||||||||| |||| ||| | |||| Sbjct 57736 GTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACAACGAAAGCATTCTGCTGG 57795 Query 260 GATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCC---TG 316 | |||| |||| || | |||||||| ||||||| || ||||||||||||| | Sbjct 57796 GCCAACATTGACACTAAGAGACGAAAGCTAGGGGAGCGAAGGGGATTAGATACCCCAATA 57855 Query 317 GTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACTTCCTTG--GTAACG 374 ||| ||| ||| |||||||| |||| ||||| | | | ||| || || | Sbjct 57856 GTACTCCTGGCCGTAAACGATGGATACTATGTGTTGTGCGTATCGATCCGTGTAGTGCTG 57915 Query 375 TAGCTAACGCGTGAAGT 391 |||||||||||| |||| Sbjct 57916 TAGCTAACGCGTTAAGT 57932 Score = 78.8 bits (86), Expect = 2e-12 Identities = 136/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 48 TAATACGTAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTT 107 ||| || ||| ||||||||||| |||||| | |||||||||||||| | ||| || | Sbjct 19184 TAAGACAGAGGATGCAAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCT 19243 Query 108 GTGTAAGACAGGTGTGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGA 167 | ||| | | ||| ||||||| ||||| |||| ||| || | | ||| | Sbjct 19244 TTTCAAGCCCGCTGTCAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAG 19303 Query 168 CTAGAGTGTGTCA-GAGGGG--GGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATAT 224 || |||| || |||||| | |||||| | ||| ||| |||||||| ||||| || Sbjct 19304 CTGGAGT---ACAGGAGGGGCTGAGGGAATTTCCGGTGGAGCGGTGAAATGAGTAGAGAT 19360 Query 225 GTGGAGGAACACCAA 239 | | | ||||||| Sbjct 19361 CGGAAAGTACACCAA 19375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289541361888