Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macleaya_20cordata_20[genbank_20GCA_5F002174775.1_202017-06-07]
4,547 sequences; 377,833,576 total letters
Query= AAMG01000383.1
Length=435
Score E
Sequences producing significant alignments: (Bits) Value
seq93 212 2e-52
seq4486 149 2e-33
seq246 136 1e-29
seq419 98.7 3e-18
>seq93
Length=428775
Score = 212 bits (234), Expect = 2e-52
Identities = 248/335 (74%), Gaps = 0/335 (0%)
Strand=Plus/Minus
Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62
|| ||| ||||||||| ||||||||| ||||||||||||||||||| || ||| |||
Sbjct 129502 TATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGC 129443
Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122
|||||||| |||||| | |||||||||||||| | ||| || | | ||| | | |||
Sbjct 129442 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCTGT 129383
Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182
||||||| ||||| |||| ||| || | | ||| | || |||| | ||
Sbjct 129382 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGG 129323
Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242
|| | |||||| | ||| ||| |||||||||||||| || | | ||||||||| ||
Sbjct 129322 GGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGG 129263
Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302
|||| ||| | ||||| |||||||| || | |||||||| ||||||| || |
Sbjct 129262 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGG 129203
Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337
|||||||||||| ||||||| ||| ||||||||
Sbjct 129202 GATTAGATACCCCAGTAGTCCTAGCCGTAAACGAT 129168
>seq4486
Length=978847
Score = 149 bits (164), Expect = 2e-33
Identities = 220/312 (71%), Gaps = 0/312 (0%)
Strand=Plus/Minus
Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62
|| ||| ||||||| | ||||||||| || |||| ||||| ||| | || ||| |||
Sbjct 269674 TATCTGGGGAATAAGTATCGGCTAACTCTGTACCAGTAGCCGTGGTGAGACAGAGGATGC 269615
Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122
|||||||| |||||| | ||||||||| |||| | ||| || | | ||| | |||
Sbjct 269614 AAGCGTTATCCGGAATGATTGGGCGTAAGGCGTATGTAGGTGGCTTTTCAAGTCCACTGT 269555
Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182
||||||| ||||| ||||| ||| | | | ||| | || |||| | ||
Sbjct 269554 CAAATCCCAGGGCTCAACCTTGGACAGGTGGTGGAAACTACCATGCTGGAGTACGGTAGG 269495
Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242
|| | |||||| | ||| ||| |||| |||| |||| || | | ||||||||||||
Sbjct 269494 GGCAGAGGGAATTTCCGGTGAAGCGGTGAGATGCTTAGAGATCCGAAAGAACACCAATGG 269435
Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302
|||| ||| | ||||| ||| |||| || | |||||||| |||||| || |
Sbjct 269434 CGAAAGCACTCTGCTGGGCCGACATTGACACTGAGAGACGAAAGCTAAGGGAGCGAATGG 269375
Query 303 GATTAGATACCC 314
||||||||||||
Sbjct 269374 GATTAGATACCC 269363
>seq246
Length=103002
Score = 136 bits (150), Expect = 1e-29
Identities = 232/330 (70%), Gaps = 6/330 (2%)
Strand=Plus/Plus
Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70
||||||||| | | ||||| | ||||||||||| |||| | ||| ||||| | |||
Sbjct 83290 GAATAAGCATCTGTTAACTCTATACCAGCAGCCGCAGTAAGTCAGAGGATGCAAACATTA 83349
Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCC 130
|| ||| | ||||||||||||| | ||| || | | ||| | ||| |||||||
Sbjct 83350 TTCAAAATGATTGGGCGTAAAGCGACTGTAGGTGGCTTTTCAAGTTCGCTGTCAAATCCC 83409
Query 131 CGGGCTTAACCTGGGAATTGCATTTGTGACTGC-ACGACTAGAGTGTGTCAGAGGGGGGT 189
||||| |||| ||| || | ||| | | || | |||| | || ||| |
Sbjct 83410 AGGGCTCAACCCTGGACAGGCGGTGAAAACTACCAAGA-TGGAGTACGGTAG-GGGCAGA 83467
Query 190 GGAA--TTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAG 247
|||| || || ||| || |||||||| ||||| || | | ||||||||||||||||
Sbjct 83468 GGAAATTTTCA-GTGGAGTGGTGAAATGTGTAGAGATTGGAAAGAACACCAATGGCGAAA 83526
Query 248 GCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTA 307
||| | ||||| |||||||| || | |||||||| ||||| | || ||||||
Sbjct 83527 GCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGATCGAATGGGATTA 83586
Query 308 GATACCCTGGTAGTCCACGCCCTAAACGAT 337
||||||| ||||||| ||| |||| |||
Sbjct 83587 GATACCCCAGTAGTCCTAGCCGTAAATGAT 83616
>seq419
Length=1766526
Score = 98.7 bits (108), Expect = 3e-18
Identities = 141/197 (72%), Gaps = 5/197 (3%)
Strand=Plus/Plus
Query 200 GTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGG 259
||| ||| |||||||||||||| || | | ||||||||| |||| ||| | ||||
Sbjct 57736 GTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACAACGAAAGCATTCTGCTGG 57795
Query 260 GATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCC---TG 316
| |||| |||| || | |||||||| ||||||| || ||||||||||||| |
Sbjct 57796 GCCAACATTGACACTAAGAGACGAAAGCTAGGGGAGCGAAGGGGATTAGATACCCCAATA 57855
Query 317 GTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACTTCCTTG--GTAACG 374
||| ||| ||| |||||||| |||| ||||| | | | ||| || || |
Sbjct 57856 GTACTCCTGGCCGTAAACGATGGATACTATGTGTTGTGCGTATCGATCCGTGTAGTGCTG 57915
Query 375 TAGCTAACGCGTGAAGT 391
|||||||||||| ||||
Sbjct 57916 TAGCTAACGCGTTAAGT 57932
Score = 78.8 bits (86), Expect = 2e-12
Identities = 136/195 (70%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 48 TAATACGTAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTT 107
||| || ||| ||||||||||| |||||| | |||||||||||||| | ||| || |
Sbjct 19184 TAAGACAGAGGATGCAAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCT 19243
Query 108 GTGTAAGACAGGTGTGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGA 167
| ||| | | ||| ||||||| ||||| |||| ||| || | | ||| |
Sbjct 19244 TTTCAAGCCCGCTGTCAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAG 19303
Query 168 CTAGAGTGTGTCA-GAGGGG--GGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATAT 224
|| |||| || |||||| | |||||| | ||| ||| |||||||| ||||| ||
Sbjct 19304 CTGGAGT---ACAGGAGGGGCTGAGGGAATTTCCGGTGGAGCGGTGAAATGAGTAGAGAT 19360
Query 225 GTGGAGGAACACCAA 239
| | | |||||||
Sbjct 19361 CGGAAAGTACACCAA 19375
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1289541361888
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |