Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macleaya_20cordata_20[genbank_20GCA_5F002174775.1_202017-06-07] 4,547 sequences; 377,833,576 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq4216 87.8 2e-15 seq1822 87.8 2e-15 seq4406 77.0 3e-12 >seq4216 Length=163458 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 27397 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 27456 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 27457 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 27502 >seq1822 Length=5663 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 1062 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 1003 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 1002 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 957 >seq4406 Length=366957 Score = 77.0 bits (84), Expect = 3e-12 Identities = 82/107 (77%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| | ||||||||| |||||||||| ||| ||||| || Sbjct 312682 GGTCGCAGTGACCAGGCCCGGGTGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 312623 Query 107 AAGTGGACGTATAGGGTG-TGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| | ||| |||||||| |||||||||||| || Sbjct 312622 AAGACCATGTATGGGGGGCTGATGCCTGCCCAGTGCCGGAAGGTCAA 312576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476778997407