Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macleaya_20cordata_20[genbank_20GCA_5F002174775.1_202017-06-07] 4,547 sequences; 377,833,576 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq4216 269 7e-70 seq1822 260 3e-67 seq458 107 5e-21 seq184 91.5 4e-16 seq414 89.7 1e-15 seq3793 82.4 2e-13 seq4406 77.0 8e-12 seq452 75.2 3e-11 >seq4216 Length=163458 Score = 269 bits (298), Expect = 7e-70 Identities = 308/418 (74%), Gaps = 27/418 (6%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| ||| |||||| Sbjct 27688 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 27629 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27628 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 27569 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | ||||||||||||||| |||||||||||| || ||| | | | || | ||| Sbjct 27568 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 27509 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||||||||| |||||||||||| ||| |||| | ||| || ||| Sbjct 27508 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 27449 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || ||| |||||||||| ||||||||||| |||||||| || ||||| Sbjct 27448 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC------CC 27395 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 ||| ||| | ||| | ||||||||||||||||||| || || Sbjct 27394 CTTTGTGAGGA-----------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATT 27352 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||||| |||||||| ||||| |||| || ||| ||||||||||||| | |||| Sbjct 27351 TTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 27294 >seq1822 Length=5663 Score = 260 bits (288), Expect = 3e-67 Identities = 306/418 (73%), Gaps = 27/418 (6%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| || ||| ||||||| ||| |||||| Sbjct 771 GCATCTTCACAGACATGTCTATTTCACCAAGCCTCTCTCCGAGACAGTGCCTAGATCGTT 830 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 831 ACGCCTTTCATGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 890 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | ||||||||||||||| |||||||||||| || ||| | | | || | ||| Sbjct 891 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 950 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||||||||| |||||||||||| ||| |||| | ||| || ||| Sbjct 951 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 1010 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || ||| |||||||||| ||||||||||| |||||||| || ||||| Sbjct 1011 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC------CC 1064 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 ||| ||| | ||| | ||||||||||||||||||| || || Sbjct 1065 CTTTGTGAGGA-----------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATT 1107 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||||| |||||||| ||||| |||| || ||| ||||||||||||| | |||| Sbjct 1108 TTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 1165 >seq458 Length=808883 Score = 107 bits (118), Expect = 5e-21 Identities = 73/82 (89%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 81 CGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACG 140 |||| |||||||||||||| |||| |||||||||||||||||||||||||| |||||| Sbjct 209972 CGTGTGGGTCGGAACTTACCTAACAAAGAATTTCGCTACCTTAGGACCGTTATAGTTACG 210031 Query 141 GCCGCCGTTTACCGGGGCTTCG 162 || ||||| |||||||||||| Sbjct 210032 ACCACCGTTCACCGGGGCTTCG 210053 >seq184 Length=165384 Score = 91.5 bits (100), Expect = 4e-16 Identities = 120/166 (72%), Gaps = 4/166 (2%) Strand=Plus/Minus Query 71 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 130 |||| || ||| | | ||| | ||||| || | || |||||| ||||||||||||||| Sbjct 131506 TTACCCCTTTCATACGGGTTGAAACTTGTCCAAAAAAGAATTTTACTACCTTAGGACCGT 131447 Query 131 TATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAAC 186 ||| ||||||||||| ||| ||||||| ||||||| ||| | | | || | || Sbjct 131446 TATAGTTACGGCCGCTGTTCACCGGGGATTCGATCGTCGGCTCCCCTGTCATCAGGTTAC 131387 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATAC 232 | | || ||||||| ||| |||||||| ||| ||| |||| Sbjct 131386 CAACTTCCTTGACCTTCCAACACTGGGCAGGCATCAGCCCCCATAC 131341 >seq414 Length=324395 Score = 89.7 bits (98), Expect = 1e-15 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 99 CCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGC 158 ||||| ||||||||||||||||||||||||||||| |||||| ||||| || || ||||| Sbjct 268519 CCCGATAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGACCGCCATTCACAGGGGC 268578 Query 159 TTCG 162 |||| Sbjct 268579 TTCG 268582 >seq3793 Length=65918 Score = 82.4 bits (90), Expect = 2e-13 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 101 CGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGC 158 ||||||||||||||||||||||||||| |||| ||||| | |||||||||||||||| Sbjct 29507 CGACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGTCGCCGTTTACCGGGGC 29564 >seq4406 Length=366957 Score = 77.0 bits (84), Expect = 8e-12 Identities = 82/107 (77%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 195 TTAACCTTCCGGCACCGGGCAGGCGTCA-CACCCTATACGTCCACTTTCGTGTTTGCAGA 253 || |||||||||||| |||||||| ||| | ||| |||| | ||| || ||||| || Sbjct 312576 TTGACCTTCCGGCACTGGGCAGGCATCAGCCCCCCATACATGGTCTTACGACTTTGCGGA 312635 Query 254 GTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 | |||||||||| ||||||||| | |||||||| || ||||| Sbjct 312636 GACCTGTGTTTTTGGTAAACAGTCACCCGGGCCTGGTCACTGCGACC 312682 >seq452 Length=552766 Score = 75.2 bits (82), Expect = 3e-11 Identities = 62/76 (82%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 343 CCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCG 402 |||||||||||||||||| | | ||||||| | ||||||| | ||||||||||||| Sbjct 385808 CCTTCTCCCGAAGTTACGAGGTCATTTTGCCGAATTCCTTCGACATGGTTCTCTCAAGCG 385749 Query 403 CCTTGGTATTCTCTAC 418 || | |||| |||||| Sbjct 385748 CCCTAGTATACTCTAC 385733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260742671424