Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macleaya_20cordata_20[genbank_20GCA_5F002174775.1_202017-06-07] 4,547 sequences; 377,833,576 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq4216 338 1e-90 seq1822 324 3e-86 seq184 134 3e-29 seq458 109 1e-21 seq4406 107 4e-21 seq414 89.7 1e-15 seq3793 82.4 2e-13 seq4456 77.0 7e-12 >seq4216 Length=163458 Score = 338 bits (374), Expect = 1e-90 Identities = 289/353 (82%), Gaps = 8/353 (2%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||||||||| |||||| Sbjct 27688 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 27629 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27628 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 27569 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||||||||||| || ||||||| || | ||| | | | || | || Sbjct 27568 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 27509 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| Sbjct 27508 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 27449 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG---GCCTGTCA 299 || || ||||||||||||||||||||||||| |||||| || ||||| ||| | Sbjct 27448 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTGT 27389 Query 300 TAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 || |||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 27388 GAG-GAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 27337 >seq1822 Length=5663 Score = 324 bits (358), Expect = 3e-86 Identities = 286/353 (81%), Gaps = 8/353 (2%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | |||||||| || || | ||||||||||| | |||||| Sbjct 771 GCATCTTCACAGACATGTCTATTTCACCAAGCCTCTCTCCGAGACAGTGCCTAGATCGTT 830 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 831 ACGCCTTTCATGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 890 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||||||||||| || ||||||| || | ||| | | | || | || Sbjct 891 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 950 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| Sbjct 951 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 1010 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG---GCCTGTCA 299 || || ||||||||||||||||||||||||| |||||| || ||||| ||| | Sbjct 1011 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTGT 1070 Query 300 TAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 || |||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 1071 GAG-GAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 1122 >seq184 Length=165384 Score = 134 bits (148), Expect = 3e-29 Identities = 243/360 (68%), Gaps = 34/360 (9%) Strand=Plus/Minus Query 27 ATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGG 86 |||||||| || || | | |||| |||||| | |||| |||||| | ||||| | Sbjct 131544 ATTTCACCAAGCCTTTCTCCGCGACAATGCCCAGGTTATTACCCCTTTCATACGGGTTGA 131485 Query 87 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTAC 146 ||||| || | || |||||| |||||||||||||||||||||||||||||| ||| || Sbjct 131484 AACTTGTCCAAAAAAGAATTTTACTACCTTAGGACCGTTATAGTTACGGCCGCTGTTCAC 131425 Query 147 TGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAGATCCCCTTAACCTTCCAGCA 202 |||| || | | ||| | | | || | || | |||| |||||||| || Sbjct 131424 CGGGGATTCGATCGTCGGCTCCCCTGTCATCAGGTTACCAACTTCCTTGACCTTCCAACA 131365 Query 203 CCGGGCAGGCGTCAGCTCCTATACATCGTCTTGC-------------------------- 236 | |||||||| ||||| || |||||| || || | Sbjct 131364 CTGGGCAGGCATCAGCCCCCATACATGGTATTACGACTTTATGGAGACCTCAACTTTAAA 131305 Query 237 --GACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG--G 292 ||||| || || |||||||||||||||||||||| || | ||||| || ||| | Sbjct 131304 AAGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTTGCCTAGGCCTGGTCACTGTGACC 131245 Query 293 CCTGTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 ||| | | ||||||||| |||| ||||| | ||| ||||||| |||||||||| Sbjct 131244 CCTTTTGTGAGGAGGCACCCCCTCTCTGGAAGTTGCAGGGCTATTTTGCTGAGTTCCTTA 131185 >seq458 Length=808883 Score = 109 bits (120), Expect = 1e-21 Identities = 72/80 (90%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 75 CGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACG 134 |||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct 209972 CGTGTGGGTCGGAACTTACCTAACAAAGAATTTCGCTACCTTAGGACCGTTATAGTTACG 210031 Query 135 GCCGCCGTTTACTGGGGCTT 154 || ||||| || ||||||| Sbjct 210032 ACCACCGTTCACCGGGGCTT 210051 >seq4406 Length=366957 Score = 107 bits (118), Expect = 4e-21 Identities = 90/109 (83%), Gaps = 1/109 (1%) Strand=Plus/Plus Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCT-ATACATCGTCTTGCGACTTAGCA 245 |||| ||||||| |||| |||||||| ||||| || |||||| ||||| |||||| || Sbjct 312574 CCTTGACCTTCCGGCACTGGGCAGGCATCAGCCCCCCATACATGGTCTTACGACTTTGCG 312633 Query 246 GAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC 294 || ||||||||||||||||||||||| | |||||| || ||||| || Sbjct 312634 GAGACCTGTGTTTTTGGTAAACAGTCACCCGGGCCTGGTCACTGCGACC 312682 >seq414 Length=324395 Score = 89.7 bits (98), Expect = 1e-15 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 93 CCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGC 152 ||||| |||||||||||||||||||||||||||||||||||| ||||| || || ||||| Sbjct 268519 CCCGATAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGACCGCCATTCACAGGGGC 268578 Query 153 TT 154 || Sbjct 268579 TT 268580 >seq3793 Length=65918 Score = 82.4 bits (90), Expect = 2e-13 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 95 CGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGC 152 ||||||||||||||||||||||||||| |||| |||||| | |||||||||| ||||| Sbjct 29507 CGACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGTCGCCGTTTACCGGGGC 29564 >seq4456 Length=529079 Score = 77.0 bits (84), Expect = 7e-12 Identities = 51/57 (89%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 308 CACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 ||||||||||||| |||||||||||||||||||||||||||||| || |||||| Sbjct 365237 CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTC 365293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062351692672