Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macleaya_20cordata_20[genbank_20GCA_5F002174775.1_202017-06-07] 4,547 sequences; 377,833,576 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq3540 190 3e-46 seq1992 78.8 1e-12 >seq3540 Length=41857 Score = 190 bits (210), Expect = 3e-46 Identities = 167/207 (81%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 53 CATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAG 112 ||||||| ||||||||||||||||||||| | | | || | | | |||||| ||||||| Sbjct 14898 CATCACATACCTGTTATTGCCTCAAACTTACGTGGCCTAAACGGCCATAGTCTCTCTAAG 14957 Query 113 AAGCCAGCCACCAACCATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTA 171 |||| ||| | || || |||| || ||||| | ||||||| ||||||| Sbjct 14958 AAGCTGGCCGTGGAGGGTACCTCCGCATAGCTAGTTTGCAGGCTGAGGTCTCATTCGTTA 15017 Query 172 TCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATA 231 || ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 15018 ACGAAATTAACCAGATAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATA 15077 Query 232 GAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||| ||| |||||| Sbjct 15078 AAATCAAGAAAGAGCTCTCAGTCTGTC 15104 >seq1992 Length=187634 Score = 78.8 bits (86), Expect = 1e-12 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 26 GCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 83 |||||||| ||||||||||| ||||||||| ||| || |||| ||||||||||||||| Sbjct 50752 GCGCGTGCAGCCCAGAACATTTAAGGGCATTACATACATGTTGTTGCCTCAAACTTCC 50695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796764901707