Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macleaya_20cordata_20[genbank_20GCA_5F002174775.1_202017-06-07] 4,547 sequences; 377,833,576 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq380 381 1e-103 seq443 268 2e-69 seq446 266 6e-69 seq2336 233 3e-59 seq4482 122 1e-25 >seq380 Length=253514 Score = 381 bits (422), Expect = 1e-103 Identities = 261/293 (89%), Gaps = 1/293 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | ||| || ||||||||||||||||||||||||||||| | Sbjct 200196 TACTAGGTTGAATTACTATCGCGGC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTTA 200254 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 200255 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 200314 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 ||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 200315 ATTCTACTTCACAATGATAGGAAGAGCCGACATCGAAGGATAAAAAAGCAACGTCGCTAT 200374 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||| ||||| ||||||||||||||||||| ||||||||||||| |||||||||| | Sbjct 200375 GAACGTTTGGCACCCACAAGCCAGTTATCCCTATGGTAACTTTTCTAACACCTCTAGCTT 200434 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||| ||| || |||||||||||||||||||| |||||| ||||||||||| Sbjct 200435 CAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTTGTATTC 200487 >seq443 Length=493305 Score = 268 bits (296), Expect = 2e-69 Identities = 180/200 (90%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | || || ||||||||||||||||||||||||||||||| Sbjct 177821 TACTAGGTTGAATTACTATCGCAGC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 177763 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| || ||||||||||||||| ||| || Sbjct 177762 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTAGGTGAACAATCCAACACTTGGTGA 177703 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 177702 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAGGCAACGTCGCTAT 177643 Query 181 GAACGCTTGGCTGCCACAAG 200 |||||||||||||||||||| Sbjct 177642 GAACGCTTGGCTGCCACAAG 177623 >seq446 Length=532606 Score = 266 bits (294), Expect = 6e-69 Identities = 164/175 (94%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 322677 GAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 322736 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 322737 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGC 322796 Query 239 CTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||||| ||| || |||||||||||||||||||| |||||| |||| |||||| Sbjct 322797 TTCAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 322851 >seq2336 Length=1642369 Score = 233 bits (258), Expect = 3e-59 Identities = 165/188 (88%), Gaps = 7/188 (4%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | ||| || ||||||||||||||||||||||||||||||| Sbjct 1602992 TACTAGGTTGAATTACTATCGCGGC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 1602934 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 1602933 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 1602874 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 1602873 ATTCTGCTTCACAATGATAGGAAGAGC------CGAAGGATCAAAAAGCAACGTCGCTAT 1602820 Query 181 GAACGCTT 188 |||||||| Sbjct 1602819 GAACGCTT 1602812 >seq4482 Length=898996 Score = 122 bits (134), Expect = 1e-25 Identities = 86/96 (90%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | ||| || ||||||||||||||||||||||||||||||| Sbjct 846533 TACTAGGTTGAATTACTATCGCGGC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 846591 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTAT-TAGT 95 |||||||||||||||||||||||||||||| |||| Sbjct 846592 CGACGGTCTAAACCCAGCTCACGTTCCCTATNTAGT 846627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854361150432