Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macleaya_20cordata_20[genbank_20GCA_5F002174775.1_202017-06-07] 4,547 sequences; 377,833,576 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq963 205 2e-50 seq4294 152 1e-34 seq2802 131 4e-28 seq93 131 4e-28 seq246 118 2e-24 >seq963 Length=1596 Score = 205 bits (226), Expect = 2e-50 Identities = 234/309 (76%), Gaps = 18/309 (6%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||| ||||||| Sbjct 590 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTACTGCCTC 532 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 531 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 472 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCAT 208 || |||| ||||||||| || ||| ||||||||| ||||||||| ||| | || | | Sbjct 471 ACTGATCATCGCCTTGGAAAGTTATTGCCTCACCAATTAGCTAATCAGACGCAAGCCCCT 412 Query 209 CTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGC 268 | | || | || ||| | || || || || | || | ||||||||| Sbjct 411 C--------CTCGGGCGGA--TTCCTCCTTTTGCT-CCTCAG--CCTACGAGGTATTAGC 365 Query 269 GTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCCG 326 |||||||| ||| | | | || ||| ||||| ||| || || ||||||||||| Sbjct 364 AGCCGTTTCCAGCTGTTGTTCTC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCCG 307 Query 327 TCCGCCGCT 335 |||||| || Sbjct 306 TCCGCCACT 298 >seq4294 Length=214024 Score = 152 bits (168), Expect = 1e-34 Identities = 133/164 (81%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 34 GGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTA 93 ||||||| || ||||| ||| |||||||| || |||| ||| | |||||||||||| Sbjct 162613 GGCATTG-CTCCGTCAGGTTTTTGCCCATTGCGGAAAATTCTCCATTACTGCCTCCCGTA 162671 Query 94 GGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGA 153 || | |||| ||||||||| || |||||||| |||||||||||||||||||| || || Sbjct 162672 GGGGCCTGGGCCGTGTCTCGGTCCCAGTGTGGTTGATCATCCTCTCAGACCAGCTATTGA 162731 Query 154 TCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGA 197 || || ||||||| || ||| ||||||||| ||||||||| || Sbjct 162732 TCATCACCTTGGTAAGTTATTGCCTCACCAATTAGCTAATCAGA 162775 >seq2802 Length=340945 Score = 131 bits (144), Expect = 4e-28 Identities = 84/92 (91%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106 |||||||||||||||||| || |||||||||| ||||||||||||||||||||| ||| Sbjct 151103 TCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTACTGCCTCCCGTAGGAGTCTGGGCCG 151044 Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCT 138 ||||||||| |||||||| ||||||||||||| Sbjct 151043 TGTCTCAGTCCCAGTGTGGCTGATCATCCTCT 151012 >seq93 Length=428775 Score = 131 bits (144), Expect = 4e-28 Identities = 100/116 (86%), Gaps = 3/116 (3%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 129559 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCAGAAAATTCCCCACTGCTGCCTC 129617 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACC 144 |||| ||||||||| | ||||||||| |||||||| ||||||||||| || |||| Sbjct 129618 CCGTTGGAGTCTGGGC--TGTCTCAGTCCCAGTGTGGCTGATCATCCTTTCGGACC 129671 >seq246 Length=103002 Score = 118 bits (130), Expect = 2e-24 Identities = 209/309 (68%), Gaps = 42/309 (14%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || ||||||||| ||||||| || |||||||||||||||||| Sbjct 78571 CACGCGGCATTG-CTCCGTCAGGCTTTTGCCCATTACGGAAAATTCCCCACTGCTGCCTC 78513 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||| | || ||||||||| |||||| ||||||| Sbjct 78512 ATGTAGGAGTCTAGGCCATGTCTCAGTCTTAGTGTGGCTGATCA---------------- 78469 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCAT 208 |||||||||| ||| ||| ||||||||||||| ||||| ||| | | | | Sbjct 78468 --------TCGCCTTGGTAAGCTATTGCCTCACCAACTAGTTAATCAGACGCAATCCCCT 78417 Query 209 CTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGC 268 || ||| || ||| |||| | | | | | |||| ||||||||| Sbjct 78416 CTTCGAGC------------GGATTCCTCCTTTAGCTCCTCAG-CCTATGGGGTATTAGC 78370 Query 269 GTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCCG 326 |||||||| | ||| | ||| || ||| ||||| ||| || || ||||||||||| Sbjct 78369 AGCCGTTTCCAACTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTATGCGTTACTCACCCG 78312 Query 327 TCCGCCGCT 335 || ||| || Sbjct 78311 TCTGCCACT 78303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071951256160