Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macleaya_20cordata_20[genbank_20GCA_5F002174775.1_202017-06-07]
4,547 sequences; 377,833,576 total letters
Query= AAMG01001178.1
Length=367
Score E
Sequences producing significant alignments: (Bits) Value
seq963 205 2e-50
seq4294 152 1e-34
seq2802 131 4e-28
seq93 131 4e-28
seq246 118 2e-24
>seq963
Length=1596
Score = 205 bits (226), Expect = 2e-50
Identities = 234/309 (76%), Gaps = 18/309 (6%)
Strand=Plus/Minus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||||||| || |||||||||||||||||| || |||||||||| |||||||
Sbjct 590 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTACTGCCTC 532
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
|||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| |
Sbjct 531 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 472
Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCAT 208
|| |||| ||||||||| || ||| ||||||||| ||||||||| ||| | || | |
Sbjct 471 ACTGATCATCGCCTTGGAAAGTTATTGCCTCACCAATTAGCTAATCAGACGCAAGCCCCT 412
Query 209 CTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGC 268
| | || | || ||| | || || || || | || | |||||||||
Sbjct 411 C--------CTCGGGCGGA--TTCCTCCTTTTGCT-CCTCAG--CCTACGAGGTATTAGC 365
Query 269 GTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCCG 326
|||||||| ||| | | | || ||| ||||| ||| || || |||||||||||
Sbjct 364 AGCCGTTTCCAGCTGTTGTTCTC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCCG 307
Query 327 TCCGCCGCT 335
|||||| ||
Sbjct 306 TCCGCCACT 298
>seq4294
Length=214024
Score = 152 bits (168), Expect = 1e-34
Identities = 133/164 (81%), Gaps = 1/164 (1%)
Strand=Plus/Plus
Query 34 GGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTA 93
||||||| || ||||| ||| |||||||| || |||| ||| | ||||||||||||
Sbjct 162613 GGCATTG-CTCCGTCAGGTTTTTGCCCATTGCGGAAAATTCTCCATTACTGCCTCCCGTA 162671
Query 94 GGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGA 153
|| | |||| ||||||||| || |||||||| |||||||||||||||||||| || ||
Sbjct 162672 GGGGCCTGGGCCGTGTCTCGGTCCCAGTGTGGTTGATCATCCTCTCAGACCAGCTATTGA 162731
Query 154 TCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGA 197
|| || ||||||| || ||| ||||||||| ||||||||| ||
Sbjct 162732 TCATCACCTTGGTAAGTTATTGCCTCACCAATTAGCTAATCAGA 162775
>seq2802
Length=340945
Score = 131 bits (144), Expect = 4e-28
Identities = 84/92 (91%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106
|||||||||||||||||| || |||||||||| ||||||||||||||||||||| |||
Sbjct 151103 TCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTACTGCCTCCCGTAGGAGTCTGGGCCG 151044
Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCT 138
||||||||| |||||||| |||||||||||||
Sbjct 151043 TGTCTCAGTCCCAGTGTGGCTGATCATCCTCT 151012
>seq93
Length=428775
Score = 131 bits (144), Expect = 4e-28
Identities = 100/116 (86%), Gaps = 3/116 (3%)
Strand=Plus/Plus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||||||| || |||||||||||||||||| || ||||||||||||||||||
Sbjct 129559 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCAGAAAATTCCCCACTGCTGCCTC 129617
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACC 144
|||| ||||||||| | ||||||||| |||||||| ||||||||||| || ||||
Sbjct 129618 CCGTTGGAGTCTGGGC--TGTCTCAGTCCCAGTGTGGCTGATCATCCTTTCGGACC 129671
>seq246
Length=103002
Score = 118 bits (130), Expect = 2e-24
Identities = 209/309 (68%), Gaps = 42/309 (14%)
Strand=Plus/Minus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||||||| || ||||||||| ||||||| || ||||||||||||||||||
Sbjct 78571 CACGCGGCATTG-CTCCGTCAGGCTTTTGCCCATTACGGAAAATTCCCCACTGCTGCCTC 78513
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
|||||||||| | || ||||||||| |||||| |||||||
Sbjct 78512 ATGTAGGAGTCTAGGCCATGTCTCAGTCTTAGTGTGGCTGATCA---------------- 78469
Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCAT 208
|||||||||| ||| ||| ||||||||||||| ||||| ||| | | | |
Sbjct 78468 --------TCGCCTTGGTAAGCTATTGCCTCACCAACTAGTTAATCAGACGCAATCCCCT 78417
Query 209 CTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGC 268
|| ||| || ||| |||| | | | | | |||| |||||||||
Sbjct 78416 CTTCGAGC------------GGATTCCTCCTTTAGCTCCTCAG-CCTATGGGGTATTAGC 78370
Query 269 GTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCCG 326
|||||||| | ||| | ||| || ||| ||||| ||| || || |||||||||||
Sbjct 78369 AGCCGTTTCCAACTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTATGCGTTACTCACCCG 78312
Query 327 TCCGCCGCT 335
|| ||| ||
Sbjct 78311 TCTGCCACT 78303
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1071951256160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |