Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macleaya_20cordata_20[genbank_20GCA_5F002174775.1_202017-06-07] 4,547 sequences; 377,833,576 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq4216 264 4e-68 seq1822 264 4e-68 seq431 120 1e-24 seq4383 102 3e-19 seq93 89.7 2e-15 seq4317 84.2 8e-14 seq466 84.2 8e-14 seq4263 82.4 3e-13 seq206 82.4 3e-13 >seq4216 Length=163458 Score = 264 bits (292), Expect = 4e-68 Identities = 345/470 (73%), Gaps = 27/470 (6%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 26479 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 26420 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| || Sbjct 26419 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 26360 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 26359 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 26300 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | ||||||| |||||||||||||||||||| || || |||| Sbjct 26299 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 26247 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| | | | |||| |||||||||||||| |||||||| |||| | Sbjct 26246 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA---GAG 26192 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 ||| || || |||| || | ||| || | ||||||| || ||||||||| Sbjct 26191 CCCT----GG----TCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCAC 26140 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||||| ||||| ||||||||| ||||||||||||||| | |||||||||||||| | Sbjct 26139 TCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCA 26080 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 26079 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 26030 >seq1822 Length=5663 Score = 264 bits (292), Expect = 4e-68 Identities = 345/470 (73%), Gaps = 27/470 (6%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 1980 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 2039 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| || Sbjct 2040 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 2099 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 2100 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 2159 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | ||||||| |||||||||||||||||||| || || |||| Sbjct 2160 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 2212 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| | | | |||| |||||||||||||| |||||||| |||| | Sbjct 2213 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA---GAG 2267 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 ||| || || |||| || | ||| || | ||||||| || ||||||||| Sbjct 2268 CCCT----GG----TCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCAC 2319 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||||| ||||| ||||||||| ||||||||||||||| | |||||||||||||| | Sbjct 2320 TCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCA 2379 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 2380 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 2429 >seq431 Length=570253 Score = 120 bits (132), Expect = 1e-24 Identities = 96/116 (83%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 475 CAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCC 534 ||||| ||||||||||||||| ||||| ||||||||| ||||||||||||||| | | Sbjct 395883 CAGGTGCTATTTCACTCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTC 395942 Query 535 GCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACAC 590 |||||||||||| |||||||||||| ||| |||||||| | ||||||||| Sbjct 395943 GCTATCGGTCACTCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACAC 395998 >seq4383 Length=306190 Score = 102 bits (112), Expect = 3e-19 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||||||| || |||||||||||||||||||||| | | ||| || |||| |||| | Sbjct 173228 GCTGCACCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCTC 173169 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 |||| ||||| |||||| || | | |||| | | ||| |||||| |||| || | Sbjct 173168 TCCTAACCACAACTCATCCGCTGATTCTTCAGCATCAGTCTGTTCGGACCTCTACTTATT 173109 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCAC 292 | |||| |||||| |||| |||||| | || || Sbjct 173108 TTCACCCAAGCTTCATCCTGGTCATGGACATATGAC 173073 >seq93 Length=428775 Score = 89.7 bits (98), Expect = 2e-15 Identities = 156/221 (71%), Gaps = 16/221 (7%) Strand=Plus/Minus Query 210 TCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTT 269 |||||| | | | ||||| | ||| ||||||| ||||||| || | |||| |||| Sbjct 130206 TCATCCGTTGATTCTTCAATATCAGTCGGTTCGGACCTCCACTTAGTTTCACCCAAGCTT 130147 Query 270 CAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTGCCACTCATACGCC 327 || |||| |||||||||||||| | | ||||||| | | | | ||| || | ||| Sbjct 130146 CATCCTGGTCATGGATAGATCACATAGGTTCGGGTCCATAAGCAGTGACAAT----TGCC 130091 Query 328 CTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAACCTCGCGACACAA 383 |||| ||||||||||||||| |||| ||| || |||||| || ||| | Sbjct 130090 CTATGAAGACTCGCTTTCGCTATGGCT---CCAGTGGGTTCCCTTAACCAAGC--CACTA 130036 Query 384 CGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCA 423 | | | |||| |||||||||||||| | |||| | |||| Sbjct 130035 CCTATGAGTCGCCGGCTCATTCTTCAACATGCACACGGTCA 129995 >seq4317 Length=230717 Score = 84.2 bits (92), Expect = 8e-14 Identities = 76/95 (80%), Gaps = 3/95 (3%) Strand=Plus/Minus Query 506 TTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565 |||||||| |||||||| ||||||| |||||||||||||| |||||||||||| ||| Sbjct 200613 TTTTCACCCTTCCCTCATGGTACTT---CGCTATCGGTCACCCAGGAGTATTTAGCCTTG 200557 Query 566 ACGGGTGGTCCCGCCAGATTCACACGAAATTTCAG 600 |||||||| | |||||||| |||| ||| Sbjct 200556 CAAGGTGGTCCTTGCTGATTCACAAACAATTGCAG 200522 >seq466 Length=3133871 Score = 84.2 bits (92), Expect = 8e-14 Identities = 102/138 (74%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 152 ATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTC 211 ||||| ||| || |||||| | | ||| ||||| ||||||||||| ||||| ||| Sbjct 1407227 ATTTCACGGAAAATGAGCTATATCCTATCTTGGTTGGCTTTTCACCCCTAGCCACAAGTC 1407286 Query 212 ATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CCCGCGCTTC 270 |||||| ||| | || || ||||||||||||||||| | | ||| | | |||| Sbjct 1407287 ATCCCCGTTTTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCTTGTTAGAGCTCTCTTC 1407346 Query 271 AACCTGCCCATGGATAGA 288 |||||| ||||| |||| Sbjct 1407347 AACCTGATCATGGCTAGA 1407364 >seq4263 Length=193726 Score = 82.4 bits (90), Expect = 3e-13 Identities = 88/116 (76%), Gaps = 3/116 (3%) Strand=Plus/Plus Query 139 TGCACCTAAATGCATTTCGGGGAGAACCAGCTATCAC---GAAGTTTGATTGGCCTTTCA 195 ||| ||| || |||||| ||||||||||||||| | | | |||||| |||| ||||| Sbjct 8180 TGCGCCTCAACGCATTTTGGGGAGAACCAGCTAGCTCTGGGTCGTTTGAGTGGCATTTCA 8239 Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCAC 251 |||| | |||| |||||| | | | |||||| | ||| |||||| ||||||| Sbjct 8240 CCCCGAATCACAACTCATCCGTTGATTCTTCAACATCAGTTAGTTCGGACCTCCAC 8295 >seq206 Length=190255 Score = 82.4 bits (90), Expect = 3e-13 Identities = 97/130 (75%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 88 GGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTA 146 ||||| |||||| |||| ||||||| ||||| || | ||| ||||| || | Sbjct 142008 GGGCCACCCTAGCCCATTGAGTGCTCGACCTCGGGCCATCGACATCATACGCTCTACGGA 142067 Query 147 AATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCAC 206 ||| |||| | ||| |||||||||| | | ||| ||||||||||||||||| |||| Sbjct 142068 AATAGATTTTGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGCCAC 142127 Query 207 AGGTCATCCC 216 | |||||||| Sbjct 142128 AAGTCATCCC 142137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817517353728