Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macleaya_20cordata_20[genbank_20GCA_5F002174775.1_202017-06-07]
4,547 sequences; 377,833,576 total letters
Query= AAMG01001291.1
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
seq4216 221 3e-55
seq1822 221 3e-55
seq431 114 3e-23
>seq4216
Length=163458
Score = 221 bits (244), Expect = 3e-55
Identities = 309/417 (74%), Gaps = 20/417 (5%)
Strand=Plus/Minus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| |
Sbjct 26413 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 26357
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
|||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | ||
Sbjct 26356 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 26301
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186
||| | |||||| |||||||||||| ||||||| |||| | ||| |||| |
Sbjct 26300 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 26243
Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCA---CCCAACAA 243
||||||| || |||||| | | |||| | ||| ||| |||| |||| |||
Sbjct 26242 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGCCCTG--- 26187
Query 244 AGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303
|| ||||||||||||| || |||||||||| | ||||||||||||||| | ||
Sbjct 26186 -GTCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GG 26129
Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363
|||||||||| || |||||||||||||||| ||| |||||||||| ||| |||||||||
Sbjct 26128 GGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAG 26069
Query 364 CCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
||||| | | |||||| | ||||| || || | ||||| || | |||||||
Sbjct 26068 CCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 26012
>seq1822
Length=5663
Score = 221 bits (244), Expect = 3e-55
Identities = 309/417 (74%), Gaps = 20/417 (5%)
Strand=Plus/Plus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| |
Sbjct 2046 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 2102
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
|||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | ||
Sbjct 2103 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 2158
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186
||| | |||||| |||||||||||| ||||||| |||| | ||| |||| |
Sbjct 2159 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 2216
Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCA---CCCAACAA 243
||||||| || |||||| | | |||| | ||| ||| |||| |||| |||
Sbjct 2217 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGCCCTG--- 2272
Query 244 AGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303
|| ||||||||||||| || |||||||||| | ||||||||||||||| | ||
Sbjct 2273 -GTCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GG 2330
Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363
|||||||||| || |||||||||||||||| ||| |||||||||| ||| |||||||||
Sbjct 2331 GGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAG 2390
Query 364 CCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
||||| | | |||||| | ||||| || || | ||||| || | |||||||
Sbjct 2391 CCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 2447
>seq431
Length=570253
Score = 114 bits (126), Expect = 3e-23
Identities = 88/103 (85%), Gaps = 1/103 (1%)
Strand=Plus/Plus
Query 277 CAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTT 336
|||| |||||||||||||| | |||||||||||| || |||||||||||||||| ||
Sbjct 395883 CAGGTGCTATTTCACTCCCCGATG-GGGGTTCTTTTCACCCTTCCCTCACGGTACTACTT 395941
Query 337 CACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCC 379
| |||||||||| |||| |||||||||||||| | | ||||||
Sbjct 395942 CGCTATCGGTCACTCAGGAGTATTTAGCCTTGCAAGGTGGTCC 395984
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1241543544448
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |