Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macleaya_20cordata_20[genbank_20GCA_5F002174775.1_202017-06-07]
4,547 sequences; 377,833,576 total letters
Query= AAMG01001432.1
Length=344
Score E
Sequences producing significant alignments: (Bits) Value
seq963 192 1e-46
seq4294 138 2e-30
seq2802 118 2e-24
seq246 113 9e-23
seq93 104 5e-20
>seq963
Length=1596
Score = 192 bits (212), Expect = 1e-46
Identities = 227/305 (74%), Gaps = 18/305 (6%)
Strand=Plus/Minus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| | ||||| |||| ||||||| | || || ||||||| |||||||||||||
Sbjct 585 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTACTGCCTCCCGTAG 526
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| |||
Sbjct 525 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 466
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180
| ||| ||||| | |||| |||||||| || |||||| | ||| ||||| || |
Sbjct 465 CATCGCCTTGGAAAGTTATTGCCTCACCAATTAGCTAATCAGACGCAAGCCCCTCCTCGG 406
Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239
|| ||| || || ||| ||||| | | || | |||||||||
Sbjct 405 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGAGGTATTAGCAGC 362
Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299
|||||||| ||| ||| ||| || |||||||| || ||| ||||||||||||||||
Sbjct 361 CGTTTCCAGCTGTTGTTCTCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 303
Query 300 CCACT 304
|||||
Sbjct 302 CCACT 298
>seq4294
Length=214024
Score = 138 bits (152), Expect = 2e-30
Identities = 215/305 (70%), Gaps = 18/305 (6%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| | ||||| ||| ||||||| | || || | ||| | |||||||||||||
Sbjct 162613 GGCATTGCTCCGTCAGGTTTTTGCCCATTGCGGAAAATTCTCCATTACTGCCTCCCGTAG 162672
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
| | |||||||||||||| |||||| ||||| | ||| |||||||| || |||| |||
Sbjct 162673 GGGCCTGGGCCGTGTCTCGGTCCCAGTGTGGTTGATCATCCTCTCAGACCAGCTATTGAT 162732
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180
| || |||||| | |||| |||||||| || |||||| | || ||||| || |
Sbjct 162733 CATCACCTTGGTAAGTTATTGCCTCACCAATTAGCTAATCAGATGCAAGCCCCTCCTCAG 162792
Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239
|| ||| || || ||| |||| | || | | |||||||||
Sbjct 162793 GCGGATTCCTCCTT------------TTGC--TCCTTAGCCA--ACGGGGTATTAGCAGC 162836
Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299
|||||| | ||| |||| ||| || | ||||| || ||| ||||||||||| ||||
Sbjct 162837 CGTTTCTAGCTGTTGTTCCCCTCCCAAGAGGAGGTT-CTTACGCGTTACTCACCCATCCG 162895
Query 300 CCACT 304
|||||
Sbjct 162896 CCACT 162900
>seq2802
Length=340945
Score = 118 bits (130), Expect = 2e-24
Identities = 85/98 (87%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66
||| | ||||| |||| ||||||| | || || ||||||| |||||||||||||||||||
Sbjct 151109 GCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTACTGCCTCCCGTAGGAGTCT 151050
Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCT 104
||||||||||||||||||| |||||| | ||| |||||
Sbjct 151049 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCT 151012
>seq246
Length=103002
Score = 113 bits (124), Expect = 9e-23
Identities = 206/305 (68%), Gaps = 40/305 (13%)
Strand=Plus/Minus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| | ||||| ||| |||||| | || || ||||||||||||||| ||||
Sbjct 78566 GGCATTGCTCCGTCAGGCTTTTGCCCATTACGGAAAATTCCCCACTGCTGCCTCATGTAG 78507
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
|||||| |||| |||||||||| | ||||| | |||
Sbjct 78506 GAGTCTAGGCCATGTCTCAGTCTTAGTGTGG------------------------CTGAT 78471
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180
| ||| |||||| |||||| ||||||||||| ||||| | ||| | ||| |||| |
Sbjct 78470 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGTTAATCAGACGCAATCCCCTCTTCGA 78411
Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240
||| | || | | | || ||||| | | |||| ||||||||| |
Sbjct 78410 GCG--GATTCCTCCTTTA---------GC--TCCTCAGCC--TATGGGGTATTAGCAGCC 78366
Query 241 GTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGC 300
|||||||| ||| |||| ||| || |||||||| || | | |||||||||||||| ||
Sbjct 78365 GTTTCCAACTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTATGCGTTACTCACCCGTCTGC 78307
Query 301 CACTA 305
|||||
Sbjct 78306 CACTA 78302
>seq93
Length=428775
Score = 104 bits (114), Expect = 5e-20
Identities = 92/114 (81%), Gaps = 2/114 (2%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| | ||||| |||| ||||||| || || ||||||||||||||||||| |
Sbjct 129564 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCAGAAAATTCCCCACTGCTGCCTCCCGTTG 129623
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCT 114
|||||||||| ||||||||||||| |||||| | ||| ||| || | ||| ||
Sbjct 129624 GAGTCTGGGC--TGTCTCAGTCCCAGTGTGGCTGATCATCCTTTCGGACCGTCT 129675
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 998354602752
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |