Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macleaya_20cordata_20[genbank_20GCA_5F002174775.1_202017-06-07] 4,547 sequences; 377,833,576 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq963 192 1e-46 seq4294 138 2e-30 seq2802 118 2e-24 seq246 113 9e-23 seq93 104 5e-20 >seq963 Length=1596 Score = 192 bits (212), Expect = 1e-46 Identities = 227/305 (74%), Gaps = 18/305 (6%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||| ||||||||||||| Sbjct 585 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTACTGCCTCCCGTAG 526 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 525 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 466 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| ||||| | |||| |||||||| || |||||| | ||| ||||| || | Sbjct 465 CATCGCCTTGGAAAGTTATTGCCTCACCAATTAGCTAATCAGACGCAAGCCCCTCCTCGG 406 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | || | ||||||||| Sbjct 405 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGAGGTATTAGCAGC 362 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| ||| ||| || |||||||| || ||| |||||||||||||||| Sbjct 361 CGTTTCCAGCTGTTGTTCTCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 303 Query 300 CCACT 304 ||||| Sbjct 302 CCACT 298 >seq4294 Length=214024 Score = 138 bits (152), Expect = 2e-30 Identities = 215/305 (70%), Gaps = 18/305 (6%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| ||| ||||||| | || || | ||| | ||||||||||||| Sbjct 162613 GGCATTGCTCCGTCAGGTTTTTGCCCATTGCGGAAAATTCTCCATTACTGCCTCCCGTAG 162672 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 | | |||||||||||||| |||||| ||||| | ||| |||||||| || |||| ||| Sbjct 162673 GGGCCTGGGCCGTGTCTCGGTCCCAGTGTGGTTGATCATCCTCTCAGACCAGCTATTGAT 162732 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | || |||||| | |||| |||||||| || |||||| | || ||||| || | Sbjct 162733 CATCACCTTGGTAAGTTATTGCCTCACCAATTAGCTAATCAGATGCAAGCCCCTCCTCAG 162792 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| |||| | || | | ||||||||| Sbjct 162793 GCGGATTCCTCCTT------------TTGC--TCCTTAGCCA--ACGGGGTATTAGCAGC 162836 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||| | ||| |||| ||| || | ||||| || ||| ||||||||||| |||| Sbjct 162837 CGTTTCTAGCTGTTGTTCCCCTCCCAAGAGGAGGTT-CTTACGCGTTACTCACCCATCCG 162895 Query 300 CCACT 304 ||||| Sbjct 162896 CCACT 162900 >seq2802 Length=340945 Score = 118 bits (130), Expect = 2e-24 Identities = 85/98 (87%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| | ||||| |||| ||||||| | || || ||||||| ||||||||||||||||||| Sbjct 151109 GCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTACTGCCTCCCGTAGGAGTCT 151050 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCT 104 ||||||||||||||||||| |||||| | ||| ||||| Sbjct 151049 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCT 151012 >seq246 Length=103002 Score = 113 bits (124), Expect = 9e-23 Identities = 206/305 (68%), Gaps = 40/305 (13%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| ||| |||||| | || || ||||||||||||||| |||| Sbjct 78566 GGCATTGCTCCGTCAGGCTTTTGCCCATTACGGAAAATTCCCCACTGCTGCCTCATGTAG 78507 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||| |||| |||||||||| | ||||| | ||| Sbjct 78506 GAGTCTAGGCCATGTCTCAGTCTTAGTGTGG------------------------CTGAT 78471 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||||||||| ||||| | ||| | ||| |||| | Sbjct 78470 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGTTAATCAGACGCAATCCCCTCTTCGA 78411 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240 ||| | || | | | || ||||| | | |||| ||||||||| | Sbjct 78410 GCG--GATTCCTCCTTTA---------GC--TCCTCAGCC--TATGGGGTATTAGCAGCC 78366 Query 241 GTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGC 300 |||||||| ||| |||| ||| || |||||||| || | | |||||||||||||| || Sbjct 78365 GTTTCCAACTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTATGCGTTACTCACCCGTCTGC 78307 Query 301 CACTA 305 ||||| Sbjct 78306 CACTA 78302 >seq93 Length=428775 Score = 104 bits (114), Expect = 5e-20 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| || || ||||||||||||||||||| | Sbjct 129564 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCAGAAAATTCCCCACTGCTGCCTCCCGTTG 129623 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCT 114 |||||||||| ||||||||||||| |||||| | ||| ||| || | ||| || Sbjct 129624 GAGTCTGGGC--TGTCTCAGTCCCAGTGTGGCTGATCATCCTTTCGGACCGTCT 129675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998354602752