Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macleaya_20cordata_20[genbank_20GCA_5F002174775.1_202017-06-07] 4,547 sequences; 377,833,576 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq4216 223 8e-56 seq1822 223 8e-56 seq4428 152 1e-34 seq190 143 6e-32 seq3615 75.2 3e-11 >seq4216 Length=163458 Score = 223 bits (246), Expect = 8e-56 Identities = 301/409 (74%), Gaps = 18/409 (4%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 27035 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 26976 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 26975 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 26916 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || ||||| || || | ||| ||||| || || | | Sbjct 26915 ACATTCTCGCTTCCGCTTCG--TCCAC-ACCTGCTCGCGCGGGTGCTTC-CCTCTAAGGC 26860 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | || ||| | ||||||||||||| ||| |||| | Sbjct 26859 GGAACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 26804 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| ||||||| | | || || ||||||||||||||||||||||||||| Sbjct 26803 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 26745 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| | || |||||||||| ||||| ||| | | || |||||| ||||| Sbjct 26744 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 26685 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 26684 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 26636 >seq1822 Length=5663 Score = 223 bits (246), Expect = 8e-56 Identities = 301/409 (74%), Gaps = 18/409 (4%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 1424 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 1483 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 1484 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 1543 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || ||||| || || | ||| ||||| || || | | Sbjct 1544 ACATTCTCGCTTCCGCTTCG--TCCAC-ACCTGCTCGCGCGGGTGCTTC-CCTCTAAGGC 1599 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | || ||| | ||||||||||||| ||| |||| | Sbjct 1600 GGAACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 1655 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| ||||||| | | || || ||||||||||||||||||||||||||| Sbjct 1656 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 1714 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| | || |||||||||| ||||| ||| | | || |||||| ||||| Sbjct 1715 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 1774 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 1775 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 1823 >seq4428 Length=430094 Score = 152 bits (168), Expect = 1e-34 Identities = 125/151 (83%), Gaps = 7/151 (5%) Strand=Plus/Minus Query 253 GAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGG---ATGGCTGCTTCCAAGCC 309 || |||||||| ||||||||||||||||| |||||||||| |||||| |||| |||| Sbjct 216486 GAGTCACTTGATCAGTGAGCTATTACGCAATCTTTCAAGGGTGATGGCTACTTCTAAGCA 216427 Query 310 AACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCC 369 |||||||||| || || ||| | | || |||||| ||||||| || ||||||||| Sbjct 216426 AACCTCCTGGCTGCCTTTGCACCCCTACGTCCTTTATCACTGAG----CATTTAGGGGCC 216371 Query 370 TTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 ||||||| ||||| ||||||||||||||||| Sbjct 216370 TTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 216340 >seq190 Length=102587 Score = 143 bits (158), Expect = 6e-32 Identities = 117/142 (82%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318 || || ||||||||||||||| |||||||||||| |||||||||| | || ||||||||| Sbjct 67880 CTCGATCAGTGAGCTATTACGTACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTG 67939 Query 319 GTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGAT 378 | ||||| || | | || |||||| || |||| || |||||||||||||||| | Sbjct 67940 GCTGTCTCTACACCCCTACCTCCTTTATCATTGAGCAGTCATTTAGGGGCCTTAGCTGGT 67999 Query 379 GATCTGGGCTGTTTCCCTCTCG 400 |||| ||||||||||||||||| Sbjct 68000 GATCCGGGCTGTTTCCCTCTCG 68021 >seq3615 Length=46245 Score = 75.2 bits (82), Expect = 3e-11 Identities = 183/267 (69%), Gaps = 18/267 (7%) Strand=Plus/Plus Query 23 CTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTGGAACCCTTGGATAATCGGC 82 |||||| || ||||||||| | ||| ||| | | ||||||||| | | |||| Sbjct 31251 CTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCGGAGGAACCCTTAGGTTTTCGGG 31310 Query 83 GGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCTGCATTCTCACT--CGCATCAAC 139 | | |||||| |||| | || |||||| ||| ||||||| || ||| || Sbjct 31311 GCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCGACATTCTCGCTTCCGCTTCG-- 31368 Query 140 TCCACCACACAGTCACCCGGCAGCTTCACCACTGACACG--ACGCTCCCCTACCCAACCA 197 ||||| || || | ||| ||||| || || | || ||||||||||||| | || Sbjct 31369 TCCAC-ACCTGCTCGCGCGGGTGCTTC-CCTCTAAGGCGGAACGCTCCCCTACCGATGCA 31426 Query 198 C----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGG 253 ||| | ||||||||||||| ||| |||| |||||| | ||| ||||||| Sbjct 31427 TTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-GCCCCGTT-CATCTTCGGCGCAA 31481 Query 254 AATCACTTGACCAGTGAGCTATTACGC 280 | | || || |||||||||||||||| Sbjct 31482 GAGCGCTCGATCAGTGAGCTATTACGC 31508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177546454528