Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macleaya_20cordata_20[genbank_20GCA_5F002174775.1_202017-06-07]
4,547 sequences; 377,833,576 total letters
Query= AAMG01001752.1
Length=400
Score E
Sequences producing significant alignments: (Bits) Value
seq4216 223 8e-56
seq1822 223 8e-56
seq4428 152 1e-34
seq190 143 6e-32
seq3615 75.2 3e-11
>seq4216
Length=163458
Score = 223 bits (246), Expect = 8e-56
Identities = 301/409 (74%), Gaps = 18/409 (4%)
Strand=Plus/Minus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | |
Sbjct 27035 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 26976
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119
||||||||| | | |||| | | |||||| |||| | || |||||| |||
Sbjct 26975 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 26916
Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177
||||||| || ||| || ||||| || || | ||| ||||| || || | |
Sbjct 26915 ACATTCTCGCTTCCGCTTCG--TCCAC-ACCTGCTCGCGCGGGTGCTTC-CCTCTAAGGC 26860
Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231
| ||||||||||||| | || ||| | ||||||||||||| ||| |||| |
Sbjct 26859 GGAACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 26804
Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291
||||| | ||| ||||||| | | || || |||||||||||||||||||||||||||
Sbjct 26803 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 26745
Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351
| |||||||||| | || |||||||||| ||||| ||| | | || |||||| |||||
Sbjct 26744 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 26685
Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
|| || |||||||||||||||| ||||| |||||||||||||||||
Sbjct 26684 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 26636
>seq1822
Length=5663
Score = 223 bits (246), Expect = 8e-56
Identities = 301/409 (74%), Gaps = 18/409 (4%)
Strand=Plus/Plus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | |
Sbjct 1424 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 1483
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119
||||||||| | | |||| | | |||||| |||| | || |||||| |||
Sbjct 1484 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 1543
Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177
||||||| || ||| || ||||| || || | ||| ||||| || || | |
Sbjct 1544 ACATTCTCGCTTCCGCTTCG--TCCAC-ACCTGCTCGCGCGGGTGCTTC-CCTCTAAGGC 1599
Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231
| ||||||||||||| | || ||| | ||||||||||||| ||| |||| |
Sbjct 1600 GGAACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 1655
Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291
||||| | ||| ||||||| | | || || |||||||||||||||||||||||||||
Sbjct 1656 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 1714
Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351
| |||||||||| | || |||||||||| ||||| ||| | | || |||||| |||||
Sbjct 1715 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 1774
Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
|| || |||||||||||||||| ||||| |||||||||||||||||
Sbjct 1775 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 1823
>seq4428
Length=430094
Score = 152 bits (168), Expect = 1e-34
Identities = 125/151 (83%), Gaps = 7/151 (5%)
Strand=Plus/Minus
Query 253 GAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGG---ATGGCTGCTTCCAAGCC 309
|| |||||||| ||||||||||||||||| |||||||||| |||||| |||| ||||
Sbjct 216486 GAGTCACTTGATCAGTGAGCTATTACGCAATCTTTCAAGGGTGATGGCTACTTCTAAGCA 216427
Query 310 AACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCC 369
|||||||||| || || ||| | | || |||||| ||||||| || |||||||||
Sbjct 216426 AACCTCCTGGCTGCCTTTGCACCCCTACGTCCTTTATCACTGAG----CATTTAGGGGCC 216371
Query 370 TTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
||||||| ||||| |||||||||||||||||
Sbjct 216370 TTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 216340
>seq190
Length=102587
Score = 143 bits (158), Expect = 6e-32
Identities = 117/142 (82%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318
|| || ||||||||||||||| |||||||||||| |||||||||| | || |||||||||
Sbjct 67880 CTCGATCAGTGAGCTATTACGTACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTG 67939
Query 319 GTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGAT 378
| ||||| || | | || |||||| || |||| || |||||||||||||||| |
Sbjct 67940 GCTGTCTCTACACCCCTACCTCCTTTATCATTGAGCAGTCATTTAGGGGCCTTAGCTGGT 67999
Query 379 GATCTGGGCTGTTTCCCTCTCG 400
|||| |||||||||||||||||
Sbjct 68000 GATCCGGGCTGTTTCCCTCTCG 68021
>seq3615
Length=46245
Score = 75.2 bits (82), Expect = 3e-11
Identities = 183/267 (69%), Gaps = 18/267 (7%)
Strand=Plus/Plus
Query 23 CTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTGGAACCCTTGGATAATCGGC 82
|||||| || ||||||||| | ||| ||| | | ||||||||| | | ||||
Sbjct 31251 CTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCGGAGGAACCCTTAGGTTTTCGGG 31310
Query 83 GGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCTGCATTCTCACT--CGCATCAAC 139
| | |||||| |||| | || |||||| ||| ||||||| || ||| ||
Sbjct 31311 GCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCGACATTCTCGCTTCCGCTTCG-- 31368
Query 140 TCCACCACACAGTCACCCGGCAGCTTCACCACTGACACG--ACGCTCCCCTACCCAACCA 197
||||| || || | ||| ||||| || || | || ||||||||||||| | ||
Sbjct 31369 TCCAC-ACCTGCTCGCGCGGGTGCTTC-CCTCTAAGGCGGAACGCTCCCCTACCGATGCA 31426
Query 198 C----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGG 253
||| | ||||||||||||| ||| |||| |||||| | ||| |||||||
Sbjct 31427 TTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-GCCCCGTT-CATCTTCGGCGCAA 31481
Query 254 AATCACTTGACCAGTGAGCTATTACGC 280
| | || || ||||||||||||||||
Sbjct 31482 GAGCGCTCGATCAGTGAGCTATTACGC 31508
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1177546454528
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |