Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macleaya_20cordata_20[genbank_20GCA_5F002174775.1_202017-06-07] 4,547 sequences; 377,833,576 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq2822 127 2e-27 seq67 122 7e-26 seq246 111 1e-22 seq446 77.0 3e-12 seq4293 75.2 9e-12 >seq2822 Length=12719 Score = 127 bits (140), Expect = 2e-27 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| |||| ||||||| ||||||||| Sbjct 10382 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGGGTTAGCTCACCCTCGCGG 10323 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 10322 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 10263 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 10262 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 10223 >seq67 Length=580124 Score = 122 bits (134), Expect = 7e-26 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| |||| ||||||| | ||||||| Sbjct 225802 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGGGTTAGCTCACTCTCGCGG 225861 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 225862 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 225921 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 225922 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 225961 >seq246 Length=103002 Score = 111 bits (122), Expect = 1e-22 Identities = 122/160 (76%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 3 GAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGA-TTAGCTCCCCCTCGCGG 61 ||||||||| ||||||| || ||| | ||| || | ||| ||||||| ||||| ||| Sbjct 79212 GAGTTGCAGCCTACAATTCGAACTGAGG-ACAGGTTTTTGGAGTTAGCTCACCCTCACGG 79154 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 79153 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 79094 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||| ||||||||| ||||||||||| | || |||| Sbjct 79093 GATGACTTAACGTCATCCTCACCTTCCTCCAGCTTATCAC 79054 >seq446 Length=532606 Score = 77.0 bits (84), Expect = 3e-12 Identities = 114/160 (71%), Gaps = 5/160 (3%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||| ||| | | |||| | ||||| ||||| ||| | | Sbjct 400057 CGAGTTGCAGAAAGCAATCCAAACTGAGGCAACCTTT-TCGGATTCGCTCCTCCTTACAG 399999 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 || || ||| |||| | |||||||| | |||| | || |||||||||||| Sbjct 399998 CTTTGCTTCCCATTGTAATTGCCATTGTAGCATATGTGTGGGCC----CATAAGGGCCAT 399943 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | ||||||||| |||||| ||||||||| || | |||| Sbjct 399942 GCAGACTTGACGCCATCCCAACCTTCCTCTAGTATATCAC 399903 >seq4293 Length=213550 Score = 75.2 bits (82), Expect = 9e-12 Identities = 49/54 (91%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 108 CCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||||||||||||||| ||||||||||||||||||||||||||| || | |||| Sbjct 42599 CCCATAAGGGCCATGCGGACTTGACGTCATCCCCACCTTCCTCTAGTATATCAC 42546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415981675590