Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macleaya_20cordata_20[genbank_20GCA_5F002174775.1_202017-06-07] 4,547 sequences; 377,833,576 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq93 167 4e-39 seq4486 127 3e-27 seq419 78.8 2e-12 >seq93 Length=428775 Score = 167 bits (184), Expect = 4e-39 Identities = 208/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 129218 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 129277 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 129278 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 129337 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| ||| | |||||| Sbjct 129338 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACAGCGGACTTGAAA 129397 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| || ||| Sbjct 129398 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTA 129457 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||||| ||||||||| ||| || Sbjct 129458 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 129502 >seq4486 Length=978847 Score = 127 bits (140), Expect = 3e-27 Identities = 199/285 (70%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||| | | | |||||| || ||||||| |||||||| | Sbjct 269390 GCTTTCGTCTCTCAGTGTCAATGTCGGCCCAGCAGAGTGCTTTCGCCATTGGTGTTCTTT 269449 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 || || |||| |||| |||||||| ||| | |||||| |||| || | | |||| || Sbjct 269450 CGGATCTCTAAGCATCTCACCGCTTCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 269509 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 | |||||| | | | |||||||||| | ||| ||| |||||| Sbjct 269510 CATGGTAGTTTCCACCACCTGTCCAAGGTTGAGCCCTGGGATTTGACAGTGGACTTGAAA 269569 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | | |||| |||||| | |||||||||||||||| ||| || | | Sbjct 269570 AGCCACCTACATACGCCTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTCA 269629 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 || ||||| |||| || ||||||||| |||||||| ||| || Sbjct 269630 CCACGGCTACTGGTACAGAGTTAGCCGATACTTATTCCCCAGATA 269674 >seq419 Length=1766526 Score = 78.8 bits (86), Expect = 2e-12 Identities = 132/191 (69%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 55 TGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTC 114 |||||| | | | || ||||| |||||||||||| ||| | |||||| ||| ||| Sbjct 19374 TGGTGTACTTTCCGATCTCTACTCATTTCACCGCTCCACCGGAAATTCCCTCAGCCCCTC 19315 Query 115 CAGCACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACAT 174 | | |||| || |||||| | || | ||||||||||| | ||| ||| Sbjct 19314 CTGTACTCCAGCTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACAG 19255 Query 175 CTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCA 234 | | |||| || |||||| | |||||| |||||| | |||||||||||||||| Sbjct 19254 CGGGCTTGAAAAGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCAT 19195 Query 235 CCTACGTATTA 245 ||| || ||| Sbjct 19194 CCTCTGTCTTA 19184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828763492137