Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macleaya_20cordata_20[genbank_20GCA_5F002174775.1_202017-06-07] 4,547 sequences; 377,833,576 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq4496 268 1e-69 seq4216 268 1e-69 seq246 134 2e-29 seq4059 107 3e-21 seq4311 95.1 2e-17 seq4417 87.8 3e-15 seq119 84.2 3e-14 seq261 82.4 1e-13 seq4160 80.6 4e-13 >seq4496 Length=2100833 Score = 268 bits (296), Expect = 1e-69 Identities = 224/273 (82%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 1870854 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 1870795 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 1870794 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 1870735 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 1870734 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 1870675 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 1870674 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 1870615 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||| | || |||||||||||| Sbjct 1870614 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 1870582 >seq4216 Length=163458 Score = 268 bits (296), Expect = 1e-69 Identities = 224/273 (82%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 28428 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 28369 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 28368 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 28309 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 28308 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 28249 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 28248 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 28189 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||| | || |||||||||||| Sbjct 28188 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 28156 >seq246 Length=103002 Score = 134 bits (148), Expect = 2e-29 Identities = 139/181 (77%), Gaps = 1/181 (1%) Strand=Plus/Minus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGG-CA 75 ||||||||| |||||| |||||| || | || ||| |||||| | || ||| || Sbjct 82383 CTTAGATGCTTTCAGCAGTTATCCGCTCGGCATTTGGCTACCCAGCGTTTGACGTGGGCA 82324 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 | ||||||| |||||||||| ||| || |||||||||||||||| ||| || |||| Sbjct 82323 TGATAACTGGTACACCAGAGGTGCATCCTTCTCGGTCCTCTCGTACTAGGGAAAGGTCCT 82264 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 ||||| || || ||||| ||||| ||||| ||||||||| | ||||||||||||| Sbjct 82263 CTCAATACTCTAACACCCACACCGGATTTGGACCTAACTGTCTCACTACGTTCTGAACCC 82204 Query 196 A 196 | Sbjct 82203 A 82203 >seq4059 Length=106388 Score = 107 bits (118), Expect = 3e-21 Identities = 122/166 (73%), Gaps = 12/166 (7%) Strand=Plus/Plus Query 109 GGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGAC 168 ||||||||| | ||| | | || ||||||||| || |||||||| ||||||| |||| Sbjct 99563 GGTCCTCTCATTCTAGGAAAAGGTCCTCTCAATGCTCTAACGCCCACAACGGATATGGAC 99622 Query 169 CGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCC 228 |||||||||| |||| || |||||||||| | || || || |||||| Sbjct 99623 AGAACTGTCTCACGACATTTTGAACCCAGCACAAGTACCACT------------CAGCCC 99670 Query 229 AACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATC 274 |||||||| || || | |||||||||| | | ||||||||||| Sbjct 99671 AACCCTTGAAACATATTACAGCCCCAGGTGGCAAAGAGCCGACATC 99716 >seq4311 Length=227052 Score = 95.1 bits (104), Expect = 2e-17 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 171 AACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAA 230 ||||||||| || |||||| ||| |||||| || || |||||||||||||||||||||| Sbjct 185231 AACTGTCTCACGGCGTTCTAAACTCAGCTCATGTACCGCTTTAATGGGCGAACAGCCCAA 185290 Query 231 CCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||| || |||| |||| || | | || | | |||||||| Sbjct 185291 CCCTTGAAACATACTATAGCCTCAAGTGGCGAAGGGTCGACATCG 185335 >seq4417 Length=400852 Score = 87.8 bits (96), Expect = 3e-15 Identities = 119/165 (72%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| || |||||| |||| | |||||| ||| |||| | | |||| | Sbjct 36888 GGTGGGCTTACTACTCAGATGCTTTCAACAGTTATCCGCTCCGCACTTGGTTACCCAACG 36829 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | || ||| |||||||||| |||| || ||| ||||||||||| Sbjct 36828 TTTACTGTAGGCACAATAATTGGAACACCAGAGGTGCGTCCTTCTCGGCCCTCTCGTACT 36769 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGA 167 | ||| || ||||||||| || |||||||| |||||| ||| Sbjct 36768 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGA 36724 >seq119 Length=1320497 Score = 84.2 bits (92), Expect = 3e-14 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 106 CCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGG 165 ||||| |||||||||||| ||| || || |||||| || | |||||| ||||| | Sbjct 956084 CCCGGGCCTCTCGTACTAGGGAAAGGTCTTCTCAATCCTCTAATGCCCACATAGGATATG 956143 Query 166 GACCGAACTGTCTCGCGACGTTCTGAACC 194 ||||||||| |||| |||||||||||||| Sbjct 956144 GACCGAACTTTCTCACGACGTTCTGAACC 956172 >seq261 Length=250846 Score = 82.4 bits (90), Expect = 1e-13 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 191 AACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGC 250 |||||||||| || || |||||||||||||||| |||||||||||| || |||| |||| Sbjct 140853 AACCCAGCTCATGTACCGCTTTAATGGGCGAACAACCCAACCCTTGGAACATACTACAGC 140794 Query 251 CCCAGGATGAGACGAGCC 268 ||||| | || ||||| Sbjct 140793 TCCAGGTGGTGAAGAGCC 140776 >seq4160 Length=137383 Score = 80.6 bits (88), Expect = 4e-13 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 72 GGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGC 131 |||| | ||||||| |||||||||| |||| ||||||||||||||||||| ||| || Sbjct 45292 GGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGG 45233 Query 132 TCCTCTCAA 140 ||||||||| Sbjct 45232 TCCTCTCAA 45224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780765606492