Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macleaya_20cordata_20[genbank_20GCA_5F002174775.1_202017-06-07] 4,547 sequences; 377,833,576 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq963 235 1e-59 seq93 149 2e-33 seq4294 145 2e-32 seq2802 132 1e-28 seq246 123 6e-26 >seq963 Length=1596 Score = 235 bits (260), Expect = 1e-59 Identities = 299/410 (73%), Gaps = 30/410 (7%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 616 TTCACGACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 557 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||| ||||||||||||||||||||| |||||||||||| ||||||| Sbjct 556 GCGGAAAATTCCCCACTACTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 497 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| |||||| || | ||| || | ||| Sbjct 496 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGAAAGTTATTGCCTCACCA 437 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 | ||||||||| | | | ||| || | || ||| ||| |||| Sbjct 436 ATTAGCTAATCAGACGCAAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGC 388 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| |||||||||| ||| | | ||||| |||| Sbjct 387 TCCTCAGCC--TACGAGGTATTAGCAGCCGTTTCCAGCTGTTGTTCTCCTCCCAAGGGCA 330 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||||||||||||||||||| ||| || || |||||| Sbjct 329 GGTTCTTACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTCCT- 282 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 || |||||||||||||||| || |||||| |||||||| ||||| Sbjct 281 -----GTCCGACTTGCATGTGTTAAGCATGCCGCAAGCGTTCATCCTGAG 237 >seq93 Length=428775 Score = 149 bits (164), Expect = 2e-33 Identities = 118/141 (84%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 129533 TTCACGACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 129592 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | || |||||||||||||||||||||| ||||||||| | ||||||||| ||||||| Sbjct 129593 GCAGAAAATTCCCCACTGCTGCCTCCCGTTGGAGTCTGGGC--TGTCTCAGTCCCAGTGT 129650 Query 125 GGCTGGTCATCCTCTCAGACC 145 ||||| ||||||| || |||| Sbjct 129651 GGCTGATCATCCTTTCGGACC 129671 >seq4294 Length=214024 Score = 145 bits (160), Expect = 2e-32 Identities = 259/372 (70%), Gaps = 32/372 (9%) Strand=Plus/Plus Query 36 GGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAG 95 ||||| ||| | ||||| || |||||||| | || |||| ||| | ||||||||||||| Sbjct 162613 GGCATTGCTCCGTCAGGTTTTTGCCCATTGCGGAAAATTCTCCATTACTGCCTCCCGTAG 162672 Query 96 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGAT 155 | | |||| ||||||||| || ||||||||| || |||||||||||||||||||| ||| Sbjct 162673 GGGCCTGGGCCGTGTCTCGGTCCCAGTGTGGTTGATCATCCTCTCAGACCAGCTATTGAT 162732 Query 156 CGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATCCCATCTGGGTTCATCCGATA 215 | || ||| ||| | ||| || | |||| ||||||||| || | | ||| Sbjct 162733 CATCACCTTGGTAAGTTATTGCCTCACCAATTAGCTAATCAGATGCAAGCCCCTCC---- 162788 Query 216 GTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCCACCGT 275 | | | | || ||| ||| |||| || | | | | | ||||||||| |||| Sbjct 162789 -TCA---GGCGGA--TTCCTCCT-TTTGCTCCTTAGCC--AACGGGGTATTAGCAGCCGT 162839 Query 276 TTCCAGTGGTTATCCCCCT-CCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCA 334 ||| || ||| | ||||| ||| ||| || ||| | | |||||||||| ||||||| Sbjct 162840 TTCTAGCTGTTGTTCCCCTCCCAAGAGG-AGGTTCTTACGCGTTACTCACCCATCCGCCA 162898 Query 335 CTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTG 394 || ||| || || |||| |||| |||||||||| ||||| || | Sbjct 162899 CT------GGAAACACCA-----CTTC------CCGTCCGACTTGCATATGTTAAGCATA 162941 Query 395 CCGCCAGCGTTC 406 || ||||||| Sbjct 162942 TAGCTAGCGTTC 162953 >seq2802 Length=340945 Score = 132 bits (146), Expect = 1e-28 Identities = 88/98 (90%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 42 GCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCT 101 ||| | |||||||| ||||||||| | || |||||||||| ||||||||||||||||||| Sbjct 151109 GCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTACTGCCTCCCGTAGGAGTCT 151050 Query 102 GGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139 || |||||||||||| |||||||||||| ||||||||| Sbjct 151049 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCT 151012 >seq246 Length=103002 Score = 123 bits (136), Expect = 6e-26 Identities = 106/131 (81%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||||||| ||| | |||||||| ||||||| Sbjct 78597 TTCACGACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTTGCCCATT 78538 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | || |||||||||||||||||| |||||||||| | || ||||||||| ||||| Sbjct 78537 ACGGAAAATTCCCCACTGCTGCCTCATGTAGGAGTCTAGGCCATGTCTCAGTCTTAGTGT 78478 Query 125 GGCTGGTCATC 135 ||||| ||||| Sbjct 78477 GGCTGATCATC 78467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222344417472