Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macleaya_20cordata_20[genbank_20GCA_5F002174775.1_202017-06-07]
4,547 sequences; 377,833,576 total letters
Query= AAMG01002175.1
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
seq963 235 1e-59
seq93 149 2e-33
seq4294 145 2e-32
seq2802 132 1e-28
seq246 123 6e-26
>seq963
Length=1596
Score = 235 bits (260), Expect = 1e-59
Identities = 299/410 (73%), Gaps = 30/410 (7%)
Strand=Plus/Minus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|| || ||||| |||||||| | | |||||||||| ||| | |||||||| ||||||||
Sbjct 616 TTCACGACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 557
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
| | || |||||||||| ||||||||||||||||||||| |||||||||||| |||||||
Sbjct 556 GCGGAAAATTCCCCACTACTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 497
Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184
||||| |||||||||| ||||||||| |||| |||||| || | ||| || | |||
Sbjct 496 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGAAAGTTATTGCCTCACCA 437
Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244
| ||||||||| | | | ||| || | || ||| ||| ||||
Sbjct 436 ATTAGCTAATCAGACGCAAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGC 388
Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304
|| | | | || | ||||||||| |||||||||| ||| | | ||||| ||||
Sbjct 387 TCCTCAGCC--TACGAGGTATTAGCAGCCGTTTCCAGCTGTTGTTCTCCTCCCAAGGGCA 330
Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364
| ||| | | |||||||||||||||||||| ||| || || ||||||
Sbjct 329 GGTTCTTACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTCCT- 282
Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
|| |||||||||||||||| || |||||| |||||||| |||||
Sbjct 281 -----GTCCGACTTGCATGTGTTAAGCATGCCGCAAGCGTTCATCCTGAG 237
>seq93
Length=428775
Score = 149 bits (164), Expect = 2e-33
Identities = 118/141 (84%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|| || ||||| |||||||| | | |||||||||| ||| | |||||||| ||||||||
Sbjct 129533 TTCACGACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 129592
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
| || |||||||||||||||||||||| ||||||||| | ||||||||| |||||||
Sbjct 129593 GCAGAAAATTCCCCACTGCTGCCTCCCGTTGGAGTCTGGGC--TGTCTCAGTCCCAGTGT 129650
Query 125 GGCTGGTCATCCTCTCAGACC 145
||||| ||||||| || ||||
Sbjct 129651 GGCTGATCATCCTTTCGGACC 129671
>seq4294
Length=214024
Score = 145 bits (160), Expect = 2e-32
Identities = 259/372 (70%), Gaps = 32/372 (9%)
Strand=Plus/Plus
Query 36 GGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAG 95
||||| ||| | ||||| || |||||||| | || |||| ||| | |||||||||||||
Sbjct 162613 GGCATTGCTCCGTCAGGTTTTTGCCCATTGCGGAAAATTCTCCATTACTGCCTCCCGTAG 162672
Query 96 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGAT 155
| | |||| ||||||||| || ||||||||| || |||||||||||||||||||| |||
Sbjct 162673 GGGCCTGGGCCGTGTCTCGGTCCCAGTGTGGTTGATCATCCTCTCAGACCAGCTATTGAT 162732
Query 156 CGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATCCCATCTGGGTTCATCCGATA 215
| || ||| ||| | ||| || | |||| ||||||||| || | | |||
Sbjct 162733 CATCACCTTGGTAAGTTATTGCCTCACCAATTAGCTAATCAGATGCAAGCCCCTCC---- 162788
Query 216 GTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCCACCGT 275
| | | | || ||| ||| |||| || | | | | | ||||||||| ||||
Sbjct 162789 -TCA---GGCGGA--TTCCTCCT-TTTGCTCCTTAGCC--AACGGGGTATTAGCAGCCGT 162839
Query 276 TTCCAGTGGTTATCCCCCT-CCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCA 334
||| || ||| | ||||| ||| ||| || ||| | | |||||||||| |||||||
Sbjct 162840 TTCTAGCTGTTGTTCCCCTCCCAAGAGG-AGGTTCTTACGCGTTACTCACCCATCCGCCA 162898
Query 335 CTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTG 394
|| ||| || || |||| |||| |||||||||| ||||| || |
Sbjct 162899 CT------GGAAACACCA-----CTTC------CCGTCCGACTTGCATATGTTAAGCATA 162941
Query 395 CCGCCAGCGTTC 406
|| |||||||
Sbjct 162942 TAGCTAGCGTTC 162953
>seq2802
Length=340945
Score = 132 bits (146), Expect = 1e-28
Identities = 88/98 (90%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 42 GCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCT 101
||| | |||||||| ||||||||| | || |||||||||| |||||||||||||||||||
Sbjct 151109 GCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTACTGCCTCCCGTAGGAGTCT 151050
Query 102 GGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139
|| |||||||||||| |||||||||||| |||||||||
Sbjct 151049 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCT 151012
>seq246
Length=103002
Score = 123 bits (136), Expect = 6e-26
Identities = 106/131 (81%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|| || ||||| |||||||| | | |||||||||| ||| | |||||||| |||||||
Sbjct 78597 TTCACGACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTTGCCCATT 78538
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
| || |||||||||||||||||| |||||||||| | || ||||||||| |||||
Sbjct 78537 ACGGAAAATTCCCCACTGCTGCCTCATGTAGGAGTCTAGGCCATGTCTCAGTCTTAGTGT 78478
Query 125 GGCTGGTCATC 135
||||| |||||
Sbjct 78477 GGCTGATCATC 78467
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1222344417472
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |