Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macleaya_20cordata_20[genbank_20GCA_5F002174775.1_202017-06-07] 4,547 sequences; 377,833,576 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq93 223 1e-55 seq963 208 2e-51 seq4294 150 5e-34 seq246 141 3e-31 seq2802 120 9e-25 seq4486 95.1 4e-17 >seq93 Length=428775 Score = 223 bits (246), Expect = 1e-55 Identities = 220/281 (78%), Gaps = 5/281 (2%) Strand=Plus/Minus Query 222 GAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCA 281 || ||| ||||| |||||| ||| ||||||||| | ||| ||||| ||||||||||||| Sbjct 129666 GAAAGGATGATCAGCCACACTGGGACTGAGACA--GCCCAGACTCCAACGGGAGGCAGCA 129609 Query 282 GTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAG 341 ||||||||| || |||||||| ||||||||| | ||||| |||||||| | |||| Sbjct 129608 GTGGGGAATTTTCTGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGAAG 129549 Query 342 GCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGGAA 399 ||| |||||||| || ||| | | | ||||| |||||||||| || ||| || Sbjct 129548 GCCCACGGGTCGTGAACTTCTTTTCCCGGAGAAGAAGCAATGACGGTATCTGGGGAATAA 129489 Query 400 GCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGA 459 || ||||||||| ||||||||||||||||||| || ||| || ||||||||||||| Sbjct 129488 GCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCGGA 129429 Query 460 ATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 || | | |||||||||| || |||||||| || | ||||| Sbjct 129428 ATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTC 129389 >seq963 Length=1596 Score = 208 bits (230), Expect = 2e-51 Identities = 189/237 (80%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 ||||||||||||||| ||||| ||| || ||| ||||||||| |||||||||| | | Sbjct 420 GCGTCTGATTAGCTAATTGGTGAGGCAATAACTTTCCAAGGCGATGATCAGTAGCTGGTC 479 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 480 CGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGT 539 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340 |||||||||| || | |||||||| ||||||||| | ||||| |||||||| | ||| Sbjct 540 AGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGAA 599 Query 341 GGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGA 395 |||| |||||||| || ||| | | | ||||| |||||||||| || ||| Sbjct 600 GGCCCACGGGTCGTGAACTTCTTTTCCCGGAGAAGAAGCAATGACGGTATCTGGGGA 656 >seq4294 Length=214024 Score = 150 bits (166), Expect = 5e-34 Identities = 133/166 (80%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 || |||||||||||| ||||| ||| || |||||||||| || ||||| |||| | | Sbjct 162778 GCATCTGATTAGCTAATTGGTGAGGCAATAACTTACCAAGGTGATGATCAATAGCTGGTC 162719 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 ||||||| ||||| ||||| ||| || ||||||||| ||| | |||||||||||||| Sbjct 162718 TGAGAGGATGATCAACCACACTGGGACCGAGACACGGCCCAGGCCCCTACGGGAGGCAGT 162659 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCC 326 | ||| |||| || | |||||||||||| ||||| | ||||| ||| Sbjct 162658 AATGGAGAATTTTCCGCAATGGGCAAAAACCTGACGGAGCAATGCC 162613 >seq246 Length=103002 Score = 141 bits (156), Expect = 3e-31 Identities = 184/260 (71%), Gaps = 26/260 (10%) Strand=Plus/Plus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 ||||||||||| ||||||||| ||| || |||||||||||||| |||||| Sbjct 78425 GCGTCTGATTAACTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAG--------- 78475 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 ||||| | ||||||||| || | | |||||||| |||||||| Sbjct 78476 ---------------CCACACTAAGACTGAGACATGGCCTAGACTCCTACATGAGGCAGC 78520 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340 |||||||||| || | ||||||||||||||||| | ||||| |||||||| | ||| Sbjct 78521 AGTGGGGAATTTTCCGTAATGGGCAAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGAA 78580 Query 341 GGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGGA 398 |||| |||||||| || ||| | | | ||||| || || ||||| || ||| | Sbjct 78581 GGCCCACGGGTCGTGAACTTCTTTTCCTAGAGAAGAAGTACTGGCGGTATGTGGGGAATA 78640 Query 399 AGCCCCGGCTAACTACGTGC 418 ||| ||||||||| |||| Sbjct 78641 AGCATCGGCTAACTCTGTGC 78660 >seq2802 Length=340945 Score = 120 bits (132), Expect = 9e-25 Identities = 86/99 (87%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 223 AGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAG 282 ||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| || Sbjct 151012 AGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGTAG 151071 Query 283 TGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCA 321 |||||||| || | |||||||| ||||||||| | |||| Sbjct 151072 TGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCA 151110 >seq4486 Length=978847 Score = 95.1 bits (104), Expect = 4e-17 Identities = 132/180 (73%), Gaps = 5/180 (3%) Strand=Plus/Minus Query 324 GCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGT-CCTCAAGGAAGAT--AAT 380 ||||||||| | ||||||| |||||| | || ||| | ||| || |||| ||| Sbjct 269738 GCCGCGTGAAGGTAGAAGGCCCACGGGTCTTGAACTTCTTTTCCTGGAG-AAGAAGCAAT 269680 Query 381 GACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAG 440 ||||||| || ||| ||| ||||||||| || |||| ||||| ||| | || || Sbjct 269679 GACGGTATCTGGGGAATAAGTATCGGCTAACTCTGTACCAGTAGCCGTGGTGAGACAGAG 269620 Query 441 GGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 | || ||||||||||||||| | | |||||||| | || |||||||| || | ||||| Sbjct 269619 GATGCAAGCGTTATCCGGAATGA-TTGGGCGTAAGGCGTATGTAGGTGGCTTTTCAAGTC 269561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497531904128