Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macleaya_20cordata_20[genbank_20GCA_5F002174775.1_202017-06-07]
4,547 sequences; 377,833,576 total letters
Query= AAMG01002183.1
Length=408
Score E
Sequences producing significant alignments: (Bits) Value
seq93 250 6e-64
seq246 168 2e-39
seq4486 165 2e-38
seq419 111 4e-22
seq4266 84.2 5e-14
seq4346 77.0 8e-12
>seq93
Length=428775
Score = 250 bits (276), Expect = 6e-64
Identities = 260/341 (76%), Gaps = 0/341 (0%)
Strand=Plus/Minus
Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64
|| ||| |||| ||||||||| ||||||||||||||||||| || ||| || |||
Sbjct 129498 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 129439
Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124
|||||||||||| | ||||||||||| || |||||||| || | ||||| | || |||
Sbjct 129438 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCTGTCAAA 129379
Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184
| | |||||||||| || || | |||||| | ||| |||| | | |||||||
Sbjct 129378 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 129319
Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244
|||||| | ||| |||||||||||||||||| || | | |||||||| ||||||
Sbjct 129318 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 129259
Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304
|| |||||| | | |||||||||||| ||||||| ||||||| || |||||
Sbjct 129258 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATT 129199
Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGG 345
|||||||| ||||||| ||||||||||||| ||||||||
Sbjct 129198 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGG 129158
>seq246
Length=103002
Score = 168 bits (186), Expect = 2e-39
Identities = 227/316 (72%), Gaps = 0/316 (0%)
Strand=Plus/Plus
Query 33 CCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGG 92
||||||||||| |||| | ||| || | | |||| | ||| | ||||||||||| |
Sbjct 83314 CCAGCAGCCGCAGTAAGTCAGAGGATGCAAACATTATTCAAAATGATTGGGCGTAAAGCG 83373
Query 93 TGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGGGACTGCTTT 152
|||||||| || | |||| | || ||| | | |||||||||| || || |
Sbjct 83374 ACTGTAGGTGGCTTTTCAAGTTCGCTGTCAAATCCCAGGGCTCAACCCTGGACAGGCGGT 83433
Query 153 TGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAAT 212
||||| | | | |||| | | ||||||| | |||| |||| || ||||||||
Sbjct 83434 GAAAACTACCAAGATGGAGTACGGTAGGGGCAGAGGAAATTTTCAGTGGAGTGGTGAAAT 83493
Query 213 GCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACT 272
| ||||| ||| | | |||||||| ||||||| || |||||| | | |||||||||
Sbjct 83494 GTGTAGAGATTGGAAAGAACACCAATGGCGAAAGCACTCTGCTGGGCCGACACTGACACT 83553
Query 273 GAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAAC 332
||| ||||||| ||||| | || ||||||||||||| ||||||| ||||||||
Sbjct 83554 GAGAGACGAAAGCTAGGGGATCGAATGGGATTAGATACCCCAGTAGTCCTAGCCGTAAAT 83613
Query 333 GATGAATACTAGGTGT 348
|||| |||||||| ||
Sbjct 83614 GATGGATACTAGGCGT 83629
Score = 77.0 bits (84), Expect = 8e-12
Identities = 68/85 (80%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323
|||||||||||| |||||| ||||||| || ||||||||||| || |||||||
Sbjct 78683 ACTGACACTGAGAGATGAAAGCTAGGGGAGCGAATAGGATTAGATAACCCAGTAGTCCTT 78742
Query 324 GCCGTAAACGATGAATACTAGGTGT 348
||| |||| ||| |||||||||||
Sbjct 78743 GCCACAAACAATGGATACTAGGTGT 78767
>seq4486
Length=978847
Score = 165 bits (182), Expect = 2e-38
Identities = 215/295 (73%), Gaps = 2/295 (1%)
Strand=Plus/Minus
Query 19 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 78
||||||||| || |||| ||||| ||| | || ||| || ||||||||||||||| |
Sbjct 269656 CGGCTAACTCTGTACCAGTAGCCGTGGTGAGACAGAGGATGCAAGCGTTATCCGGAATGA 269597
Query 79 CTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAAC 138
||||||||| | || |||||||| || | ||||| || ||| | | ||||||||
Sbjct 269596 TTGGGCGTAAGGCGTATGTAGGTGGCTTTTCAAGTCCACTGTCAAATCCCAGGGCTCAAC 269537
Query 139 CCCGGGACTGCTTTTG-AAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTA 197
| || || | | || ||||| | ||| |||| | | ||||||| |||||| |
Sbjct 269536 CTTGG-ACAGGTGGTGGAAACTACCATGCTGGAGTACGGTAGGGGCAGAGGGAATTTCCG 269478
Query 198 GTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGG 257
||| |||||||| |||| |||| || | | |||||||| ||||||| || ||||||
Sbjct 269477 GTGAAGCGGTGAGATGCTTAGAGATCCGAAAGAACACCAATGGCGAAAGCACTCTGCTGG 269418
Query 258 ACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312
| | | |||||||||| ||||||| |||||| || |||||||||||||
Sbjct 269417 GCCGACATTGACACTGAGAGACGAAAGCTAAGGGAGCGAATGGGATTAGATACCC 269363
>seq419
Length=1766526
Score = 111 bits (122), Expect = 4e-22
Identities = 139/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 46 TAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTT 105
||| || ||| || ||||||||||||||| | ||||||||||| || |||||||| |
Sbjct 19184 TAAGACAGAGGATGCAAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCT 19243
Query 106 TCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGG 165
| | ||| | | || ||| | | |||||||||| || || | |||||| | |
Sbjct 19244 TTTCAAGCCCGCTGTCAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAG 19303
Query 166 CTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAG 225
|| |||| |||||||||| |||||| | ||| |||||||||||| ||||| || |
Sbjct 19304 CTGGAGTACAGGAGGGGCTGAGGGAATTTCCGGTGGAGCGGTGAAATGAGTAGAGATCGG 19363
Query 226 GAGGAACACCA 236
| | ||||||
Sbjct 19364 AAAGTACACCA 19374
Score = 102 bits (112), Expect = 2e-19
Identities = 148/206 (72%), Gaps = 11/206 (5%)
Strand=Plus/Plus
Query 198 GTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGG 257
||| |||||||||||||||||| || | | |||||||| |||| || ||||||
Sbjct 57736 GTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACAACGAAAGCATTCTGCTGG 57795
Query 258 ACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC---TG 314
| | ||||||| || ||||||| ||||||| || ||||||||||||| |
Sbjct 57796 GCCAACATTGACACTAAGAGACGAAAGCTAGGGGAGCGAAGGGGATTAGATACCCCAATA 57855
Query 315 GTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCG----GT 370
||| ||| ||||||||||||| |||||| |||| | ||| || | |||| ||
Sbjct 57856 GTACTCCTGGCCGTAAACGATGGATACTATGTGT-TGTGCGTAT---CGATCCGTGTAGT 57911
Query 371 GCCGCAGCAAACGCAATAAGTATTCC 396
|| | ||| ||||| ||||||| ||
Sbjct 57912 GCTGTAGCTAACGCGTTAAGTATCCC 57937
>seq4266
Length=196634
Score = 84.2 bits (92), Expect = 5e-14
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323
|| ||| ||| || | ||||| |||||||| |||||||||||| ||| ||||||||||
Sbjct 29103 ACCGACGCTGGGGTGCAAAAGCATGGGGAGCGAACAGGATTAGACACCTTGGTAGTCCAT 29162
Query 324 GCCGTAAACGATGA 337
||||||||||||||
Sbjct 29163 GCCGTAAACGATGA 29176
>seq4346
Length=304081
Score = 77.0 bits (84), Expect = 8e-12
Identities = 69/87 (79%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 57 GGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAG 116
|||| ||||||||||||||| | ||||||||||| || |||||||| || | ||||| |
Sbjct 126332 GGGCAAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCG 126273
Query 117 AGGTGAAAGGCTATGGCTCAACCCCGG 143
|| ||| | | |||||||||| ||
Sbjct 126272 CTGTCAAATCCCAGGGCTCAACCCTGG 126246
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203145290496
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |