Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macleaya_20cordata_20[genbank_20GCA_5F002174775.1_202017-06-07] 4,547 sequences; 377,833,576 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq93 250 6e-64 seq246 168 2e-39 seq4486 165 2e-38 seq419 111 4e-22 seq4266 84.2 5e-14 seq4346 77.0 8e-12 >seq93 Length=428775 Score = 250 bits (276), Expect = 6e-64 Identities = 260/341 (76%), Gaps = 0/341 (0%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| ||||||||||||||||||| || ||| || ||| Sbjct 129498 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 129439 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || | ||||| | || ||| Sbjct 129438 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCTGTCAAA 129379 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 129378 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 129319 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||||||||||||||||| || | | |||||||| |||||| Sbjct 129318 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 129259 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| ||||||| || ||||| Sbjct 129258 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATT 129199 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGG 345 |||||||| ||||||| ||||||||||||| |||||||| Sbjct 129198 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGG 129158 >seq246 Length=103002 Score = 168 bits (186), Expect = 2e-39 Identities = 227/316 (72%), Gaps = 0/316 (0%) Strand=Plus/Plus Query 33 CCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGG 92 ||||||||||| |||| | ||| || | | |||| | ||| | ||||||||||| | Sbjct 83314 CCAGCAGCCGCAGTAAGTCAGAGGATGCAAACATTATTCAAAATGATTGGGCGTAAAGCG 83373 Query 93 TGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGGGACTGCTTT 152 |||||||| || | |||| | || ||| | | |||||||||| || || | Sbjct 83374 ACTGTAGGTGGCTTTTCAAGTTCGCTGTCAAATCCCAGGGCTCAACCCTGGACAGGCGGT 83433 Query 153 TGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAAT 212 ||||| | | | |||| | | ||||||| | |||| |||| || |||||||| Sbjct 83434 GAAAACTACCAAGATGGAGTACGGTAGGGGCAGAGGAAATTTTCAGTGGAGTGGTGAAAT 83493 Query 213 GCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACT 272 | ||||| ||| | | |||||||| ||||||| || |||||| | | ||||||||| Sbjct 83494 GTGTAGAGATTGGAAAGAACACCAATGGCGAAAGCACTCTGCTGGGCCGACACTGACACT 83553 Query 273 GAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAAC 332 ||| ||||||| ||||| | || ||||||||||||| ||||||| |||||||| Sbjct 83554 GAGAGACGAAAGCTAGGGGATCGAATGGGATTAGATACCCCAGTAGTCCTAGCCGTAAAT 83613 Query 333 GATGAATACTAGGTGT 348 |||| |||||||| || Sbjct 83614 GATGGATACTAGGCGT 83629 Score = 77.0 bits (84), Expect = 8e-12 Identities = 68/85 (80%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323 |||||||||||| |||||| ||||||| || ||||||||||| || ||||||| Sbjct 78683 ACTGACACTGAGAGATGAAAGCTAGGGGAGCGAATAGGATTAGATAACCCAGTAGTCCTT 78742 Query 324 GCCGTAAACGATGAATACTAGGTGT 348 ||| |||| ||| ||||||||||| Sbjct 78743 GCCACAAACAATGGATACTAGGTGT 78767 >seq4486 Length=978847 Score = 165 bits (182), Expect = 2e-38 Identities = 215/295 (73%), Gaps = 2/295 (1%) Strand=Plus/Minus Query 19 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 78 ||||||||| || |||| ||||| ||| | || ||| || ||||||||||||||| | Sbjct 269656 CGGCTAACTCTGTACCAGTAGCCGTGGTGAGACAGAGGATGCAAGCGTTATCCGGAATGA 269597 Query 79 CTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAAC 138 ||||||||| | || |||||||| || | ||||| || ||| | | |||||||| Sbjct 269596 TTGGGCGTAAGGCGTATGTAGGTGGCTTTTCAAGTCCACTGTCAAATCCCAGGGCTCAAC 269537 Query 139 CCCGGGACTGCTTTTG-AAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTA 197 | || || | | || ||||| | ||| |||| | | ||||||| |||||| | Sbjct 269536 CTTGG-ACAGGTGGTGGAAACTACCATGCTGGAGTACGGTAGGGGCAGAGGGAATTTCCG 269478 Query 198 GTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGG 257 ||| |||||||| |||| |||| || | | |||||||| ||||||| || |||||| Sbjct 269477 GTGAAGCGGTGAGATGCTTAGAGATCCGAAAGAACACCAATGGCGAAAGCACTCTGCTGG 269418 Query 258 ACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312 | | | |||||||||| ||||||| |||||| || ||||||||||||| Sbjct 269417 GCCGACATTGACACTGAGAGACGAAAGCTAAGGGAGCGAATGGGATTAGATACCC 269363 >seq419 Length=1766526 Score = 111 bits (122), Expect = 4e-22 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46 TAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTT 105 ||| || ||| || ||||||||||||||| | ||||||||||| || |||||||| | Sbjct 19184 TAAGACAGAGGATGCAAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCT 19243 Query 106 TCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGG 165 | | ||| | | || ||| | | |||||||||| || || | |||||| | | Sbjct 19244 TTTCAAGCCCGCTGTCAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAG 19303 Query 166 CTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAG 225 || |||| |||||||||| |||||| | ||| |||||||||||| ||||| || | Sbjct 19304 CTGGAGTACAGGAGGGGCTGAGGGAATTTCCGGTGGAGCGGTGAAATGAGTAGAGATCGG 19363 Query 226 GAGGAACACCA 236 | | |||||| Sbjct 19364 AAAGTACACCA 19374 Score = 102 bits (112), Expect = 2e-19 Identities = 148/206 (72%), Gaps = 11/206 (5%) Strand=Plus/Plus Query 198 GTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGG 257 ||| |||||||||||||||||| || | | |||||||| |||| || |||||| Sbjct 57736 GTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACAACGAAAGCATTCTGCTGG 57795 Query 258 ACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC---TG 314 | | ||||||| || ||||||| ||||||| || ||||||||||||| | Sbjct 57796 GCCAACATTGACACTAAGAGACGAAAGCTAGGGGAGCGAAGGGGATTAGATACCCCAATA 57855 Query 315 GTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCG----GT 370 ||| ||| ||||||||||||| |||||| |||| | ||| || | |||| || Sbjct 57856 GTACTCCTGGCCGTAAACGATGGATACTATGTGT-TGTGCGTAT---CGATCCGTGTAGT 57911 Query 371 GCCGCAGCAAACGCAATAAGTATTCC 396 || | ||| ||||| ||||||| || Sbjct 57912 GCTGTAGCTAACGCGTTAAGTATCCC 57937 >seq4266 Length=196634 Score = 84.2 bits (92), Expect = 5e-14 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323 || ||| ||| || | ||||| |||||||| |||||||||||| ||| |||||||||| Sbjct 29103 ACCGACGCTGGGGTGCAAAAGCATGGGGAGCGAACAGGATTAGACACCTTGGTAGTCCAT 29162 Query 324 GCCGTAAACGATGA 337 |||||||||||||| Sbjct 29163 GCCGTAAACGATGA 29176 >seq4346 Length=304081 Score = 77.0 bits (84), Expect = 8e-12 Identities = 69/87 (79%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 57 GGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAG 116 |||| ||||||||||||||| | ||||||||||| || |||||||| || | ||||| | Sbjct 126332 GGGCAAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCG 126273 Query 117 AGGTGAAAGGCTATGGCTCAACCCCGG 143 || ||| | | |||||||||| || Sbjct 126272 CTGTCAAATCCCAGGGCTCAACCCTGG 126246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203145290496