Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macleaya_20cordata_20[genbank_20GCA_5F002174775.1_202017-06-07] 4,547 sequences; 377,833,576 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq4216 174 5e-41 seq1822 174 5e-41 seq466 96.9 1e-17 seq190 91.5 5e-16 seq93 86.0 2e-14 seq4383 84.2 7e-14 seq4428 75.2 4e-11 >seq4216 Length=163458 Score = 174 bits (192), Expect = 5e-41 Identities = 396/589 (67%), Gaps = 44/589 (7%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | |||||||| | |||||||| ||||| Sbjct 26278 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 26337 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || |||||||||||||| ||| |||||||| ||| Sbjct 26338 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATC 26397 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| || | | ||| || |||||||||||| Sbjct 26398 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 26457 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTT 236 |||||| || ||| || ||| | || |||| |||||| ||||||||| Sbjct 26458 CCGAAATGCGTTGAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTT 26512 Query 237 ATGGCTAGGG-GGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC--------- 286 || ||| | | ||| ||||||| | |||||||| |||| | Sbjct 26513 TCGGTGCGGGCCGCGAGAGCG--GTACCAAATCGAGGCAAACTCTGAATACTAGATATGA 26570 Query 287 -----GCATCAGTTTTACCGCGG-----------GAGTGAGGGCATGGGTGCTAAGGTCC 330 || | | || | || |||||| ||||| | |||| | | Sbjct 26571 CCCCAAAATAAAAATAACAGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTC 26630 Query 331 GTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTA 390 | ||||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | Sbjct 26631 ATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGA 26690 Query 391 AACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATT 450 | || || || | ||| ||||||| |||| ||| || | |||||||||| | || Sbjct 26691 TA--AAGGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTT 26747 Query 451 TAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTA 510 ||||||||||||| |||||||| ||||| || ||| || || | |||| || Sbjct 26748 GAAAGAGTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTA 26806 Query 511 AGTTGTCTACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558 || ||| ||||||| ||||||| | | ||| |||||||||||||| Sbjct 26807 AGCGATCTGCCGAAGCTGTGGGAT-GTAAAAATGCATCGGTAGGGGAGC 26854 >seq1822 Length=5663 Score = 174 bits (192), Expect = 5e-41 Identities = 396/589 (67%), Gaps = 44/589 (7%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | |||||||| | |||||||| ||||| Sbjct 2181 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 2122 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || |||||||||||||| ||| |||||||| ||| Sbjct 2121 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATC 2062 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| || | | ||| || |||||||||||| Sbjct 2061 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 2002 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTT 236 |||||| || ||| || ||| | || |||| |||||| ||||||||| Sbjct 2001 CCGAAATGCGTTGAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTT 1947 Query 237 ATGGCTAGGG-GGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC--------- 286 || ||| | | ||| ||||||| | |||||||| |||| | Sbjct 1946 TCGGTGCGGGCCGCGAGAGCG--GTACCAAATCGAGGCAAACTCTGAATACTAGATATGA 1889 Query 287 -----GCATCAGTTTTACCGCGG-----------GAGTGAGGGCATGGGTGCTAAGGTCC 330 || | | || | || |||||| ||||| | |||| | | Sbjct 1888 CCCCAAAATAAAAATAACAGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTC 1829 Query 331 GTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTA 390 | ||||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | Sbjct 1828 ATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGA 1769 Query 391 AACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATT 450 | || || || | ||| ||||||| |||| ||| || | |||||||||| | || Sbjct 1768 TA--AAGGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTT 1712 Query 451 TAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTA 510 ||||||||||||| |||||||| ||||| || ||| || || | |||| || Sbjct 1711 GAAAGAGTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTA 1653 Query 511 AGTTGTCTACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558 || ||| ||||||| ||||||| | | ||| |||||||||||||| Sbjct 1652 AGCGATCTGCCGAAGCTGTGGGAT-GTAAAAATGCATCGGTAGGGGAGC 1605 >seq466 Length=3133871 Score = 96.9 bits (106), Expect = 1e-17 Identities = 112/150 (75%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 52 TCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAAT 110 |||| ||||| |||| ||||| | || ||||| ||| |||||| |||||||||| || Sbjct 1407364 TCTAGCCATGATCAGGTTGAAGAGAGCTCTAACAAGCCTTGGAGGACCGAACCCACGTAT 1407305 Query 111 GTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATA 170 || | |||| |||||||| ||||| ||||||||||| || || ||| | ||| ||| Sbjct 1407304 GTGGCAAAAAACGGGGATGACTTGTGGCTAGGGGTGAAAAGCCAACCAAGATAGGATATA 1407245 Query 171 GCTGGTTCTCTCCGAAAACTATTTAGGTAG 200 ||| || || |||| || ||| |||| Sbjct 1407244 GCTCATTTTCCGTGAAATCTGTTTCAGTAG 1407215 >seq190 Length=102587 Score = 91.5 bits (100), Expect = 5e-16 Identities = 132/184 (72%), Gaps = 3/184 (2%) Strand=Plus/Minus Query 306 AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTA 365 |||||| ||||| | |||| | | | ||||||| || | ||||| | |||||| Sbjct 68051 AGTGAGACGATGGGGGATAAGCTTCTTCGTCGAGAGGGAAACAGCCCGGATCACCAGCTA 67992 Query 366 AGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGAT 425 ||||||| ||||||| ||| | | | | || || || | || ||||||| |||| Sbjct 67991 AGGCCCCTAAATGACTGCTCAATGATA--AAGGAGGTAGGGGTGTAGAGACAGCCAGGAG 67934 Query 426 GTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTC 485 ||| || | |||||||||| | || ||||||| ||||| |||||||| ||||| || Sbjct 67933 GTTTGCCTAGAAGCAGCCA-CCCTTGAAAGAGTACGTAATAGCTCACTGATCGAGCGCTC 67875 Query 486 GGGC 489 |||| Sbjct 67874 GGGC 67871 >seq93 Length=428775 Score = 86.0 bits (94), Expect = 2e-14 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | |||||||| | | |||||||| ||||| Sbjct 130078 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTATGTGATCTATCCATG 130137 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || |||||||||||||| ||| || ||||| ||| Sbjct 130138 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATATTGAAGAATC 130197 Query 122 AGGGGATGAG 131 | ||||||| Sbjct 130198 AACGGATGAG 130207 >seq4383 Length=306190 Score = 84.2 bits (92), Expect = 7e-14 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 57 CCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAA 116 ||||| ||||||||||| | ||| | | | ||||||||||| ||| ||| |||| Sbjct 173082 CCATGACCAGGATGAAGCTTGGGTGAAAATAAGTAGAGGTCCGAACAGACTGATGCTGAA 173141 Query 117 AAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGT 176 ||| || ||||||| ||||| |||| | |||| || | | ||| || |||||||| Sbjct 173142 GAATCAGCGGATGAGTTGTGGTTAGGAGAGAAATGCCACTCGAACCCAGAGCTAGCTGGT 173201 Query 177 TCTCTCCGAAA 187 |||| |||||| Sbjct 173202 TCTCCCCGAAA 173212 >seq4428 Length=430094 Score = 75.2 bits (82), Expect = 4e-11 Identities = 102/140 (73%), Gaps = 8/140 (6%) Strand=Plus/Plus Query 336 CGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTA 395 ||||||| || | ||||| | ||||||||||||| |||| ||| ||| | | | Sbjct 216340 CGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAAT----GCTCAGTGATA--A 216393 Query 396 ACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCAT--TCATTTAA 453 | || || | ||| ||| |||| |||| ||| |||| |||| |||||| | || || Sbjct 216394 AGGACGTAGGGGTGCAAAGGCAGCCAGGAGGTTTGCTTAGAAGTAGCCATCACCCTTGAA 216453 Query 454 AGAGTGCGTAACAGCTCACT 473 ||| ||||||| |||||||| Sbjct 216454 AGATTGCGTAATAGCTCACT 216473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689523173888