Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macleaya_20cordata_20[genbank_20GCA_5F002174775.1_202017-06-07] 4,547 sequences; 377,833,576 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq4216 188 2e-45 seq1822 136 1e-29 seq458 96.9 1e-17 seq4496 87.8 6e-15 seq414 82.4 3e-13 >seq4216 Length=163458 Score = 188 bits (208), Expect = 2e-45 Identities = 391/570 (69%), Gaps = 23/570 (4%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| |||||||||||||||| ||| || ||||| | || || Sbjct 28021 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 27962 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | | |||| |||||||| |||||||||||| |||||||||| | || |||||| Sbjct 27961 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAT 27903 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177 ||||| | ||| | |||||||| || || || || |||||||||| || Sbjct 27902 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTC 27843 Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTC---CACAACCACTAGCGTGGCCGCAT 234 | | ||||||||||| ||| | | ||| | | || || | |||| | Sbjct 27842 TAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCCGGAAGGG-GGCCT--T 27786 Query 235 CATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTG 292 | | | | ||||||| || | || || || | || |||||| ||| | | ||| Sbjct 27785 CTTCGCCCTCCACCTAAGCTGCGCAGGAAAGGCCC--AAAGCCAATCCCAGGGAACAGTA 27728 Query 293 AAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAA 351 ||| | | |||||||| |||| | || | | ||||||| || | | | Sbjct 27727 AAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTA 27668 Query 352 TTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGG 410 |||||||| |||| | ||||||| | || |||||||||| ||||||| |||||| Sbjct 27667 TTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGG 27609 Query 411 AACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTAC 470 |||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || Sbjct 27608 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCAC 27549 Query 471 TGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTT 530 |||||||| | ||| ||| || || | | |||| | ||| ||||| Sbjct 27548 CGGGGCTTC-GGTCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTGACCTT 27495 Query 531 CCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 || |||| ||||||||||||| || |||| Sbjct 27494 CCGGCACTGGGCAGGCGTCAGCCCCCATAC 27465 >seq1822 Length=5663 Score = 136 bits (150), Expect = 1e-29 Identities = 136/175 (78%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct 826 TCGTTACGCCTTTCATGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 885 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCACGTGG 505 ||||||||||| |||||||| || |||||||| | ||| ||| || || Sbjct 886 CGTTATAGTTACGGCCGCCGTTCACCGGGGCTTC-GGTCGCCGGCTC-----CCCTGTCA 939 Query 506 TGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 | | |||| | ||| ||||||| |||| ||||||||||||| || |||| Sbjct 940 TCAGGTCACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATAC 994 >seq458 Length=808883 Score = 96.9 bits (106), Expect = 1e-17 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 399 CGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACC 458 |||| |||||||||||||| |||| ||||||||||||||||||| ||||||||||| Sbjct 209972 CGTGTGGGTCGGAACTTACCTAACAAAGAATTTCGCTACCTTAGGACCGTTATAGTTACG 210031 Query 459 ACCGCCGTTTACTGGGGCTTC 479 ||| ||||| || |||||||| Sbjct 210032 ACCACCGTTCACCGGGGCTTC 210052 >seq4496 Length=2100833 Score = 87.8 bits (96), Expect = 6e-15 Identities = 143/204 (70%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| |||||||||||||||| ||| || ||||| | || || Sbjct 1870447 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 1870388 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | | |||| |||||||| |||||||||||| |||||||||| | | ||||||| Sbjct 1870387 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTA-CGCCCCAT 1870329 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177 ||||| | ||| | |||||||| || || || || |||||||||| || Sbjct 1870328 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTC 1870269 Query 178 CACTACGGTCAGAGTGGTATTTCA 201 | | ||||||||||| ||| Sbjct 1870268 TAGCTCTTCCAGAGTGGTATCTCA 1870245 >seq414 Length=324395 Score = 82.4 bits (90), Expect = 3e-13 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 417 CCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGC 476 ||||| |||||||||||||||||||||| ||||||||||| |||||| || || ||||| Sbjct 268519 CCCGATAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGACCGCCATTCACAGGGGC 268578 Query 477 TTC 479 ||| Sbjct 268579 TTC 268581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702322591872