Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macleaya_20cordata_20[genbank_20GCA_5F002174775.1_202017-06-07]
4,547 sequences; 377,833,576 total letters
Query= AAMG01002223.1
Length=366
Score E
Sequences producing significant alignments: (Bits) Value
seq963 111 3e-22
seq93 96.9 7e-18
seq2802 89.7 1e-15
>seq963
Length=1596
Score = 111 bits (122), Expect = 3e-22
Identities = 114/148 (77%), Gaps = 1/148 (1%)
Strand=Plus/Minus
Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140
|||||||||| || | |||| | ||||| ||| ||||| | | ||| |||| ||
Sbjct 624 AAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTT 566
Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200
||| |||||| || ||||| |||| ||||||||||||||||| ||| |||||||||||
Sbjct 565 TCGCCCATTGCGGAAAATTCCCCACTACTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAG 506
Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGA 228
| ||| ||||| || | ||||||| ||
Sbjct 505 TCCCAGTGTGGCTGATCATCCTCTCGGA 478
>seq93
Length=428775
Score = 96.9 bits (106), Expect = 7e-18
Identities = 158/228 (69%), Gaps = 20/228 (9%)
Strand=Plus/Plus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60
|||||||||||| |||||||||||||||||||| || ||| || |
Sbjct 129462 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 129510
Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120
| || ||| | |||||||||| || | |||| | ||||| ||| |||||
Sbjct 129511 GC------TTCTTCTCCGGGAAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGC 129563
Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180
| | ||| |||| || ||| |||||| || ||||| |||||||||||||||| |
Sbjct 129564 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCAGAAAATTCCCCACTGCTGCCTCCCGTTG 129623
Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228
|||| ||| | ||||||||| ||| ||||| || | |||| || ||
Sbjct 129624 GAGTCTGGGC--TGTCTCAGTCCCAGTGTGGCTGATCATCCTTTCGGA 129669
>seq2802
Length=340945
Score = 89.7 bits (98), Expect = 1e-15
Identities = 75/92 (82%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 133 TCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCG 192
|||| || ||| |||||| || ||||| |||| ||||||||||||||||| ||| |||
Sbjct 151103 TCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTACTGCCTCCCGTAGGAGTCTGGGCCG 151044
Query 193 TGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224
||||||||| ||| ||||| || | ||||||
Sbjct 151043 TGTCTCAGTCCCAGTGTGGCTGATCATCCTCT 151012
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1068751401664
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |