Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macleaya_20cordata_20[genbank_20GCA_5F002174775.1_202017-06-07] 4,547 sequences; 377,833,576 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq443 111 3e-22 seq4482 107 3e-21 seq380 107 3e-21 seq308 86.0 1e-14 seq362 73.4 6e-11 >seq443 Length=493305 Score = 111 bits (122), Expect = 3e-22 Identities = 97/118 (82%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| || ||||||| | ||| || ||| || |||| Sbjct 177819 GTACGAGAGGAACCGTTGA-TTCA-AACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 177876 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 | |||||||||||| | ||| |||||||| ||||||||||||||||||||||||| || Sbjct 177877 GGCGCGAAGCTACCGTGTGCAGGATTATGACTGAACGCCTCTAAGTCAGAATCCAGGC 177934 >seq4482 Length=898996 Score = 107 bits (118), Expect = 3e-21 Identities = 96/118 (81%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 846535 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 846478 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 | |||||||||||| | ||| |||||||| ||||||||||||||||||||||||| || Sbjct 846477 GGCGCGAAGCTACCGTGTGCAGGATTATGACTGAACGCCTCTAAGTCAGAATCCAGGC 846420 >seq380 Length=253514 Score = 107 bits (118), Expect = 3e-21 Identities = 96/118 (81%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 200198 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 200141 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 | |||||||||||| | ||| |||||||| ||||||||||||||||||||||||| || Sbjct 200140 GGCGCGAAGCTACCGTGTGCAGGATTATGACTGAACGCCTCTAAGTCAGAATCCAGGC 200083 >seq308 Length=404284 Score = 86.0 bits (94), Expect = 1e-14 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 54 AGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 || ||||| |||||||||||| | ||| |||||||| ||||||||||||||||||||||| Sbjct 113297 AGTCAGTGGCGCGAAGCTACCGTGTGCAGGATTATGACTGAACGCCTCTAAGTCAGAATC 113238 Query 114 CATGC 118 || || Sbjct 113237 CAGGC 113233 >seq362 Length=427424 Score = 73.4 bits (80), Expect = 6e-11 Identities = 85/112 (76%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 2 TACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTG 61 |||||||||||||| || |||| | ||||||| | | | || ||| || || || Sbjct 140665 TACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGTGCTTGGTTGAAAAGCCAATG 140608 Query 62 CCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 ||| |||||||| | ||| ||||||| || ||||||||||||||||||| Sbjct 140607 GCGCAAAGCTACCGTGTGCAGGATTATAACTTGACGCCTCTAAGTCAGAATC 140556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819163915008