Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macleaya_20cordata_20[genbank_20GCA_5F002174775.1_202017-06-07]
4,547 sequences; 377,833,576 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq3668 601 1e-169
seq464 536 4e-150
seq303 260 4e-67
seq4125 224 3e-56
seq4322 93.3 1e-16
>seq3668
Length=52152
Score = 601 bits (666), Expect = 1e-169
Identities = 446/511 (87%), Gaps = 9/511 (2%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||| |||| ||| |||||| |||| ||||||||||||||||||
Sbjct 23197 GTACTCATTCCAATTACCAGACTCAAT-GAGCCCGGTATTGTTATTTATTGTCACTACCT 23139
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 23138 CCCCGTGTTAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 23079
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
||||||||||||||||||||||||||||||||||| |||| |||||| ||||| |||
Sbjct 23078 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATAGTA 23019
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 23018 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCA 22959
Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA-AGGAGC-CCCGAAG--GGCG 295
| ||||| |||||| ||| |||||| |||||||| || || | | ||||| |||
Sbjct 22958 CTGAGGCCGTGCGATCCGTCGAGTTATCATGAATCATCAGAGCAACGGGCGAAGCCCGCG 22899
Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAG 354
| | ||||||||||||||| || ||||||| ||||||||||||| | ||| |||||||
Sbjct 22898 TCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAG 22839
Query 355 CTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATT 414
|||||||||||| |||||||||| |||| || |||| |||||| |||| ||||||||||
Sbjct 22838 CTCTAGAATTACTACGGTTATCCGAGTAGCAA-GTACCATCAAACAAACTATAACTGATT 22780
Query 415 TAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCTTA 473
||||||||||||||||||||||| || | ||| | | ||||||| |||| |||||||||
Sbjct 22779 TAATGAGCCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATTCATGGCTTA 22720
Query 474 ATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||||||||||||||||||||||||||
Sbjct 22719 ATCTTTGAGACAAGCATATGACTACTGGCAG 22689
>seq464
Length=1457561
Score = 536 bits (594), Expect = 4e-150
Identities = 432/513 (84%), Gaps = 13/513 (3%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||| |||| ||| |||||| |||| ||||||||||||||||||
Sbjct 848223 GTACTCATTCCAATTACCAGACTCAAT-GAGCCCGGTATTGTTATTTATTGTCACTACCT 848281
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
|| | ||| |||||||||||||||| ||||||||||||||| |||||||||| |||||
Sbjct 848282 CCACATGTTAGGATTGGGTAATTTGCACGCCTGCTGCCTTCCATGGATGTGGTTACCGTT 848341
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
|||||||||||||||||||||||||||||||||| | || |||||| || || |||
Sbjct 848342 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTGTCTGTCACCCGTCACCACTATAGTA 848401
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
||||||||||||||||||||||||||||||||||||||||||||||| | || || ||
Sbjct 848402 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCACCAGCA 848461
Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC----CCCGAAG--GG 293
| |||| |||||| ||| |||||| |||||||| || |||| ||||| |
Sbjct 848462 CTGAGGCGGTGCGATCCGTCGAGTTATCATGAATCATCA--GAGCAATAGGCGAAGCCCG 848519
Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352
||| | |||||||||||||||||| ||||||| |||||||||||| | ||| |||||
Sbjct 848520 CGTCGACCTTTTATCTAATAAATACATCCCTTCCAGAAGTCGGGGTTAGTTGCACGTATT 848579
Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412
|||||||||||||| || ||||||| |||| || |||| |||||| |||| ||||||||
Sbjct 848580 AGCTCTAGAATTACTACAGTTATCCGAGTAGCAA-GTACCATCAAACAAACTATAACTGA 848638
Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471
||||||||||||||| ||||||||| || | ||| | | ||||||| |||||||| |||
Sbjct 848639 TTTAATGAGCCATTCACAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATAGCT 848698
Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||||||||||||||||||||||||||||
Sbjct 848699 TAATCTTTGAGACAAGCATATGACTACTGGCAG 848731
>seq303
Length=2407993
Score = 260 bits (288), Expect = 4e-67
Identities = 183/205 (89%), Gaps = 3/205 (1%)
Strand=Plus/Minus
Query 302 TTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360
||||||||||||||| || ||||||| ||||||||||||| | ||| |||||||||||||
Sbjct 932924 TTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCTAG 932865
Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420
|||||| |||||||||| |||| ||| ||| |||||| |||| ||||||||||||||||
Sbjct 932864 AATTACTACGGTTATCCGAGTAGCAAG-TACCATCAAACAAACTATAACTGATTTAATGA 932806
Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAATCTTT 479
||||||||||||||||| || | ||| || ||||||| ||||||||||||||||||||
Sbjct 932805 GCCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATGGCTTAATCTTT 932746
Query 480 GAGACAAGCATATGACTACTGGCAG 504
|||||||||||||||||||||||||
Sbjct 932745 GAGACAAGCATATGACTACTGGCAG 932721
>seq4125
Length=125073
Score = 224 bits (248), Expect = 3e-56
Identities = 210/261 (80%), Gaps = 6/261 (2%)
Strand=Plus/Plus
Query 133 TCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCT 192
||||| |||||||||| |||||| |||| |||||| ||||| |||||||||||||||
Sbjct 8555 TCTCCAGAATCGAACCTTAATTCTCCGTCACCCGTCACCACCATAGTAGGCCACTATCCT 8614
Query 193 ACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC-AAGGCCATGC 251
||||||||||||| |||||| |||||||||||||| | || || || | |||||| |||
Sbjct 8615 ACCATCGAAAGTTAATAGGGTAGAAATTTGAATGATGCGTCACCAGCACTAAGGCCGTGC 8674
Query 252 GATTCGTTAAGTTATTATGAATCACCA-AGGAGC-CCCGAAG--GGCGTTGGTTTTTTAT 307
||| ||| |||||| |||||||| | || | | ||||| || | | ||||||
Sbjct 8675 GATCCGTCGAGTTATCATGAATCATTAGAGCAACGGGCGAAGCCTGCATCGACCTTTTAT 8734
Query 308 CTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTAC 366
||||||||| || ||||||| ||||| |||||| | ||| |||||||||||||||||||
Sbjct 8735 CTAATAAATGCATCCCTTCCAAAAGTCAGGGTTTGTTGCACGTATTAGCTCTAGAATTAC 8794
Query 367 CACGGTTATCCATGTAGTAAG 387
|||||||||| |||| |||
Sbjct 8795 TACGGTTATCCGAGTAGCAAG 8815
>seq4322
Length=237343
Score = 93.3 bits (102), Expect = 1e-16
Identities = 76/90 (84%), Gaps = 3/90 (3%)
Strand=Plus/Minus
Query 414 TTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTT 472
|||||||| |||| ||||||| || || | ||| || ||||||| |||||||||||||
Sbjct 43058 TTAATGAGTCATTTGCAGTTTGACAGTCTGAATTAGTTCATACTTACACATGCATGGCTT 42999
Query 473 AATCTTTGAGACAAGCATATGACTACTGGC 502
||||||||||||||||||| |||||| ||
Sbjct 42998 AATCTTTGAGACAAGCATA--ACTACTAGC 42971
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510331322112
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |