Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macleaya_20cordata_20[genbank_20GCA_5F002174775.1_202017-06-07] 4,547 sequences; 377,833,576 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq3668 601 1e-169 seq464 536 4e-150 seq303 260 4e-67 seq4125 224 3e-56 seq4322 93.3 1e-16 >seq3668 Length=52152 Score = 601 bits (666), Expect = 1e-169 Identities = 446/511 (87%), Gaps = 9/511 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| ||| |||||| |||| |||||||||||||||||| Sbjct 23197 GTACTCATTCCAATTACCAGACTCAAT-GAGCCCGGTATTGTTATTTATTGTCACTACCT 23139 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 23138 CCCCGTGTTAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 23079 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| |||||| ||||| ||| Sbjct 23078 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATAGTA 23019 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 23018 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCA 22959 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA-AGGAGC-CCCGAAG--GGCG 295 | ||||| |||||| ||| |||||| |||||||| || || | | ||||| ||| Sbjct 22958 CTGAGGCCGTGCGATCCGTCGAGTTATCATGAATCATCAGAGCAACGGGCGAAGCCCGCG 22899 Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAG 354 | | ||||||||||||||| || ||||||| ||||||||||||| | ||| ||||||| Sbjct 22898 TCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAG 22839 Query 355 CTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATT 414 |||||||||||| |||||||||| |||| || |||| |||||| |||| |||||||||| Sbjct 22838 CTCTAGAATTACTACGGTTATCCGAGTAGCAA-GTACCATCAAACAAACTATAACTGATT 22780 Query 415 TAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCTTA 473 ||||||||||||||||||||||| || | ||| | | ||||||| |||| ||||||||| Sbjct 22779 TAATGAGCCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATTCATGGCTTA 22720 Query 474 ATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||| Sbjct 22719 ATCTTTGAGACAAGCATATGACTACTGGCAG 22689 >seq464 Length=1457561 Score = 536 bits (594), Expect = 4e-150 Identities = 432/513 (84%), Gaps = 13/513 (3%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| ||| |||||| |||| |||||||||||||||||| Sbjct 848223 GTACTCATTCCAATTACCAGACTCAAT-GAGCCCGGTATTGTTATTTATTGTCACTACCT 848281 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 || | ||| |||||||||||||||| ||||||||||||||| |||||||||| ||||| Sbjct 848282 CCACATGTTAGGATTGGGTAATTTGCACGCCTGCTGCCTTCCATGGATGTGGTTACCGTT 848341 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||||||||||||||||| | || |||||| || || ||| Sbjct 848342 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTGTCTGTCACCCGTCACCACTATAGTA 848401 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| | || || || Sbjct 848402 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCACCAGCA 848461 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC----CCCGAAG--GG 293 | |||| |||||| ||| |||||| |||||||| || |||| ||||| | Sbjct 848462 CTGAGGCGGTGCGATCCGTCGAGTTATCATGAATCATCA--GAGCAATAGGCGAAGCCCG 848519 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||| | |||||||||||||||||| ||||||| |||||||||||| | ||| ||||| Sbjct 848520 CGTCGACCTTTTATCTAATAAATACATCCCTTCCAGAAGTCGGGGTTAGTTGCACGTATT 848579 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| || ||||||| |||| || |||| |||||| |||| |||||||| Sbjct 848580 AGCTCTAGAATTACTACAGTTATCCGAGTAGCAA-GTACCATCAAACAAACTATAACTGA 848638 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 ||||||||||||||| ||||||||| || | ||| | | ||||||| |||||||| ||| Sbjct 848639 TTTAATGAGCCATTCACAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATAGCT 848698 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 848699 TAATCTTTGAGACAAGCATATGACTACTGGCAG 848731 >seq303 Length=2407993 Score = 260 bits (288), Expect = 4e-67 Identities = 183/205 (89%), Gaps = 3/205 (1%) Strand=Plus/Minus Query 302 TTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 ||||||||||||||| || ||||||| ||||||||||||| | ||| ||||||||||||| Sbjct 932924 TTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCTAG 932865 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||| |||||||||| |||| ||| ||| |||||| |||| |||||||||||||||| Sbjct 932864 AATTACTACGGTTATCCGAGTAGCAAG-TACCATCAAACAAACTATAACTGATTTAATGA 932806 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAATCTTT 479 ||||||||||||||||| || | ||| || ||||||| |||||||||||||||||||| Sbjct 932805 GCCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATGGCTTAATCTTT 932746 Query 480 GAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||| Sbjct 932745 GAGACAAGCATATGACTACTGGCAG 932721 >seq4125 Length=125073 Score = 224 bits (248), Expect = 3e-56 Identities = 210/261 (80%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 133 TCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCT 192 ||||| |||||||||| |||||| |||| |||||| ||||| ||||||||||||||| Sbjct 8555 TCTCCAGAATCGAACCTTAATTCTCCGTCACCCGTCACCACCATAGTAGGCCACTATCCT 8614 Query 193 ACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC-AAGGCCATGC 251 ||||||||||||| |||||| |||||||||||||| | || || || | |||||| ||| Sbjct 8615 ACCATCGAAAGTTAATAGGGTAGAAATTTGAATGATGCGTCACCAGCACTAAGGCCGTGC 8674 Query 252 GATTCGTTAAGTTATTATGAATCACCA-AGGAGC-CCCGAAG--GGCGTTGGTTTTTTAT 307 ||| ||| |||||| |||||||| | || | | ||||| || | | |||||| Sbjct 8675 GATCCGTCGAGTTATCATGAATCATTAGAGCAACGGGCGAAGCCTGCATCGACCTTTTAT 8734 Query 308 CTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTAC 366 ||||||||| || ||||||| ||||| |||||| | ||| ||||||||||||||||||| Sbjct 8735 CTAATAAATGCATCCCTTCCAAAAGTCAGGGTTTGTTGCACGTATTAGCTCTAGAATTAC 8794 Query 367 CACGGTTATCCATGTAGTAAG 387 |||||||||| |||| ||| Sbjct 8795 TACGGTTATCCGAGTAGCAAG 8815 >seq4322 Length=237343 Score = 93.3 bits (102), Expect = 1e-16 Identities = 76/90 (84%), Gaps = 3/90 (3%) Strand=Plus/Minus Query 414 TTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTT 472 |||||||| |||| ||||||| || || | ||| || ||||||| ||||||||||||| Sbjct 43058 TTAATGAGTCATTTGCAGTTTGACAGTCTGAATTAGTTCATACTTACACATGCATGGCTT 42999 Query 473 AATCTTTGAGACAAGCATATGACTACTGGC 502 ||||||||||||||||||| |||||| || Sbjct 42998 AATCTTTGAGACAAGCATA--ACTACTAGC 42971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510331322112