Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq957 235 1e-59 seq1251 192 2e-46 seq11 172 1e-40 seq855 93.3 1e-16 seq515 93.3 1e-16 seq13 77.0 8e-12 >seq957 Length=3583874 Score = 235 bits (260), Expect = 1e-59 Identities = 298/409 (73%), Gaps = 2/409 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||| ||||||||| |||||||||||||||||||||| ||| ||| Sbjct 6081 TATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGC 6140 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | |||||||||||||| | ||| || | | |||| | | || Sbjct 6141 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGT 6200 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||||| ||||| |||| ||| || | | ||| | || |||| | || Sbjct 6201 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGG 6260 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||| | ||| ||| |||||||||||||| || | | ||||||||| || Sbjct 6261 GGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGG 6320 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||| ||| | ||||| |||||||| || | |||||||| |||||||||| | Sbjct 6321 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGG 6380 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362 |||||||||||| ||||||| ||| |||||||| ||||| | || | | | Sbjct 6381 GATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGA 6440 Query 363 TCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || || || ||||||||||||| |||| ||||||||||| ||| Sbjct 6441 CCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 6489 >seq1251 Length=396947 Score = 192 bits (212), Expect = 2e-46 Identities = 245/334 (73%), Gaps = 10/334 (3%) Strand=Plus/Plus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67 || ||| |||| |||||||||| |||||||||||||||||||| ||| ||| ||||| | Sbjct 275807 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTG 275866 Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT---TGTGTAAGACAGGTGTGA 124 || ||||||| ||| ||||||||| | || ||||||| | | || || ||| Sbjct 275867 TTCTTCGGAATGACTAGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAG---TGA 275923 Query 125 AATCCCCGGGCTTAACCTGG-GAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAG 183 || | | | || |||| | | ||| | | || ||| ||||| | ||||| Sbjct 275924 AAGTCGC---CAAAAACTGGTGGAATGCTCTCGAAACCAATTCACTTGAGTGAGACAGAG 275980 Query 184 GGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGC 243 | | |||||||| | |||||| ||||||| || |||| | | |||||| |||| || Sbjct 275981 GAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGAAGATCTACGAAGGAACGCCAAAAGC 276040 Query 244 GAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGG 303 ||||||||| | ||||| || |||||| | ||||||| |||||||| ||| || Sbjct 276041 GAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGAGTGCGAAAGCATGGGGAGCGAACGGG 276100 Query 304 ATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||||||||||||||| ||| |||||||| Sbjct 276101 ATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 276134 >seq11 Length=35299535 Score = 172 bits (190), Expect = 1e-40 Identities = 233/327 (71%), Gaps = 0/327 (0%) Strand=Plus/Minus Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70 ||||||| | ||||||||| |||||||||||||| |||||| ||| ||||||||||| Sbjct 33685502 GAATAAGTATCGGCTAACTCTGTGCCAGCAGCCGCAATAATACAGAGGATGCAAGCGTTA 33685443 Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCC 130 |||||| | |||||||||||||| | ||| || | | |||| | | ||| ||||||| Sbjct 33685442 TCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGTTGTCAAATCCC 33685383 Query 131 CGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTG 190 |||| |||| || || | | ||| | || |||| || || || | | Sbjct 33685382 AAGGCTCAACCCTAGACAGGCGGTGGAAACTACCAAGCTGGAGTATGGTAGGGGTAGAGG 33685323 Query 191 GAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCA 250 ||||| | ||||||||||| |||||| || | | ||||||||| | | || || Sbjct 33685322 GAATTTTCGATRGAGCAGTGAAATACGTAGAGATTGGAAAGAACACCAACGRCAAAAACA 33685263 Query 251 GCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGAT 310 | ||||| |||||||| || | || ||||| | |||||||| ||||||||| Sbjct 33685262 CTCTGCTGGGCCGACACTGACACTGAGAGACRAAAGCTAGAGGAGCAAATGGGATTAGAT 33685203 Query 311 ACCCTGGTAGTCCACGCCCTAAACGAT 337 |||| ||||||| ||| ||||| || Sbjct 33685202 ACCCCAGTAGTCCTAGCCGTAAACAAT 33685176 Score = 100 bits (110), Expect = 7e-19 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 200 GTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGG 259 ||| ||| ||||||||| |||| || | |||||||||||||||| ||| | |||| Sbjct 14084826 GTGGAGCGGTGAAATGCATAGAGATCAAAAAGAACACCAATGGCGAAAGCACTCTACTGG 14084885 Query 260 GATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTA 319 | ||||||||| || | || ||||| ||| |||||| ||||||||||||| ||| Sbjct 14084886 GCCAACACTGACACTGAGAGACAAAAGCTAGGGCAGCAAATGGGATTAGATACCCCAGTA 14084945 Query 320 GTCCACGCCCTAAACGAT 337 |||| ||| |||| ||| Sbjct 14084946 GTCCTAGCCATAAATGAT 14084963 >seq855 Length=4499644 Score = 93.3 bits (102), Expect = 1e-16 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 2 ATACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTG 61 ||| || |||||||| | ||||||||| ||||| |||| ||||||||||| ||| || Sbjct 73565 ATATCTTGAGAATAAGTATCGGCTAACTCTGTGCCCGCAGTCGCGGTAATACAGAGGATG 73624 Query 62 CAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTG 121 |||| |||| | ||| | ||| |||||||||| | ||| || | | |||| | | || Sbjct 73625 CAAGTGTTATCCCAAATAATTGGACGTAAAGCGTTTGTAGGTGGCTTTTTAAGTCCGCTG 73684 Query 122 TGAAATCCC 130 | ||||||| Sbjct 73685 TCAAATCCC 73693 >seq515 Length=1039154 Score = 93.3 bits (102), Expect = 1e-16 Identities = 156/222 (70%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249 |||||| | ||| || |||||||| |||| || | | ||||||||||||| || | Sbjct 298809 GGAATTTCTGGTGGAGTGGTGAAATGTTTAGAGATCGGAAAGAACACCAATGGCAAAAAC 298868 Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309 |||| ||||| || || | | |||||| |||||||||| |||||||| Sbjct 298869 GCTATGTTGGGCCGACACTAACACTGAGAGATGAAAGCTAGGGGAGCAAATGGGATTAGA 298928 Query 310 TACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACTTCCT-TG 368 |||||| || |||| ||| |||||||| ||| | |||| | || | | ||| || Sbjct 298929 TACCCTAGTGGTCCTAGCCGTAAACGATGGATACTCGGCGTTGTGCATAT-CGACCTGTG 298987 Query 369 --GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATA 408 || ||||||||||| |||||| ||||||||||| || Sbjct 298988 CAGTGCTGTAGCTAACGCATGAAGTATCCCGCCTGGGGAGTA 299029 >seq13 Length=34719086 Score = 77.0 bits (84), Expect = 8e-12 Identities = 66/82 (80%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 256 CTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCT 315 ||||| ||||||||| || | |||||||| |||||||||| ||||||||||||| Sbjct 18907700 CTGGGCCAACACTGACACTAAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGATACCCC 18907641 Query 316 GGTAGTCCACGCCCTAAACGAT 337 ||||||| | || |||||||| Sbjct 18907640 AGTAGTCCTCACCGTAAACGAT 18907619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289583867104