Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq1251 152 7e-35 seq1056 143 4e-32 seq2 141 1e-31 seq201 96.9 5e-18 seq627 89.7 7e-16 seq557 87.8 2e-15 seq621 86.0 9e-15 seq15 84.2 3e-14 seq1008 75.2 2e-11 seq1019 73.4 5e-11 >seq1251 Length=396947 Score = 152 bits (168), Expect = 7e-35 Identities = 181/243 (74%), Gaps = 12/243 (5%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 208879 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 208937 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||||||||||| ||| || | | ||| | | | |||| | Sbjct 208938 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 208995 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | ||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 208996 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 209046 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | || |||| | | | |||| |||||| |||||| || ||||||||||||||| | Sbjct 209047 TCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGG 209106 Query 246 GTA 248 ||| Sbjct 209107 GTA 209109 Score = 152 bits (168), Expect = 7e-35 Identities = 181/243 (74%), Gaps = 12/243 (5%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 352028 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 352086 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||||||||||| ||| || | | ||| | | | |||| | Sbjct 352087 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 352144 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | ||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 352145 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 352195 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | || |||| | | | |||| |||||| |||||| || ||||||||||||||| | Sbjct 352196 TCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGG 352255 Query 246 GTA 248 ||| Sbjct 352256 GTA 352258 >seq1056 Length=2373031 Score = 143 bits (158), Expect = 4e-32 Identities = 178/243 (73%), Gaps = 12/243 (5%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||| | ||||| | ||||||||| ||||| ||| ||| | || Sbjct 1046573 CCTTCCAGCACCGGGCARGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCARAGTCC 1046631 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||||||||| | ||| || | | ||| | | | |||| | Sbjct 1046632 TGTGTTTTTAATAAACAGTCGYTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 1046689 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | ||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 1046690 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 1046740 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | || |||| | | | |||| |||||| || ||| || ||||||||||||||| | Sbjct 1046741 TCGACATGGTTCTCTCAAGCGCCCTAGTATACTYTACTTGTTCACCTGTGTCGGTTTGGG 1046800 Query 246 GTA 248 ||| Sbjct 1046801 GTA 1046803 >seq2 Length=36374806 Score = 141 bits (156), Expect = 1e-31 Identities = 177/243 (73%), Gaps = 20/243 (8%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 35934940 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 35934882 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 35934881 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 35934835 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | |||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 35934834 TTGTG----AG--GGGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 35934781 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 35934780 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 35934721 Query 246 GTA 248 ||| Sbjct 35934720 GTA 35934718 Score = 82.4 bits (90), Expect = 1e-13 Identities = 73/90 (81%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | || |||||| ||||| ||| ||| | || Sbjct 26623420 CCTTCCAGCACCGGGCAGGTGTCAGACTCTAAACATCGTGTTACCA-CTTAGCAGAGTCC 26623362 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCT 95 |||||||||| |||||||||||| ||| || Sbjct 26623361 TGTGTTTTTAATAAACAGTCGCTACCCCCT 26623332 >seq201 Length=1705435 Score = 96.9 bits (106), Expect = 5e-18 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201 |||||| ||||||||||||||||||||||||||||||||||| || | || |||| | | Sbjct 1259151 GCACCCTTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCTTTCAACATGGTTCTCTC 1259210 Query 202 GAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 | || | |||||| |||||| || |||| ||| ||||| Sbjct 1259211 AAGCGTCCTAGTATACTCTACTTGTTCACCGCTGTTGGTTT 1259251 >seq627 Length=1416070 Score = 89.7 bits (98), Expect = 7e-16 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201 ||||||||||||| |||||||||||||||||||||||||||| || | || |||| | | Sbjct 1040829 GCACCCCTTCTCCAGAAGTTACGGGGCCATTTTGCCGAATTCTTTCAACATGGTTCTCTC 1040888 Query 202 GAACGCCTTAGTATTCTCTACCTG 225 | || | |||||| |||||| || Sbjct 1040889 AAGCGTCATAGTATACTCTACTTG 1040912 >seq557 Length=2969275 Score = 87.8 bits (96), Expect = 2e-15 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 146 CCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAAC 205 ||||||||||||||||||||||| ||||| | || ||||||| | |||| | | | Sbjct 136882 CCCTTCTCCCGAAGTTACGGGGCTATTTTTCTGAGTTCCTTAGAGAGAGTTGTCTCACGC 136823 Query 206 GCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 ||| ||||||||||||| ||||||||||| |||| |||| Sbjct 136822 CCCTAGGTATTCTCTACCTACCCACCTGTGTCTGTTTCGGGTA 136780 >seq621 Length=388750 Score = 86.0 bits (94), Expect = 9e-15 Identities = 166/243 (68%), Gaps = 14/243 (6%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| || |||||||| ||||| | ||||||| | |||| | | ||| | || Sbjct 355171 CCTTCCAGCAGCGGGCAGGTGTCAGAC--TATACATTGTGGTACCA-CATAGCAGAGTCC 355227 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| ||| ||||| || ||| | | | | ||| | | | |||| || Sbjct 355228 TGTGTTTTTAATAAGCAGTCACTACCCCCGAGTATGTGCCGCTTGCCTAA--TCAAAACA 355285 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | | |||| ||||| |||| |||||||||||||||||| |||| | |||| Sbjct 355286 TAGGAGACCA---------CCCCTCCTCCAGAAGTTACGGGGCCATTTCGCCGCACTCCT 355336 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | || ||| | | | | || || ||| |||||| || |||||| ||| |||| | Sbjct 355337 TCGACATGTTTCTCTCAAGCACCCTAATATACTCTACTTGTTCACCTGCGTCTGTTTGGG 355396 Query 246 GTA 248 ||| Sbjct 355397 GTA 355399 >seq15 Length=47181002 Score = 84.2 bits (92), Expect = 3e-14 Identities = 87/110 (79%), Gaps = 5/110 (5%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||| ||||||| ||||||||| || ||||||| || ||||||| | |||| | Sbjct 18632482 GGCACCC-TTCTCCCAAAGTTACGGTGCTATTTTGCTGAGTTCCTTAGAGAGAGTTGTCT 18632540 Query 201 CGAACGCCT-TAG-TATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | |||||| ||| |||||||||||| |||||| ||||| ||| |||| Sbjct 18632541 C--ACGCCTCTAGGTATTCTCTACCTACCCACCTRTGTCGATTTTGGGTA 18632588 >seq1008 Length=1203078 Score = 75.2 bits (82), Expect = 2e-11 Identities = 74/97 (76%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 146 CCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAAC 205 |||||||| |||||||| |||| |||||||||| ||| ||| | |||| | || | Sbjct 782904 CCCTTCTCYTGAAGTTACAGGGCTATTTTGCCGAGTTCRTTAGAGAGAGTTGTCTCGCGC 782845 Query 206 GCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 | | || |||||||||| | |||||||||||||| Sbjct 782844 CCYTAGGTGTTCTCTACCTACCGACCTGTGTCGGTTT 782808 >seq1019 Length=388313 Score = 73.4 bits (80), Expect = 5e-11 Identities = 160/243 (66%), Gaps = 19/243 (8%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| || |||||||| ||||| | ||||||| | |||| || | || Sbjct 356589 CCTTCCAGCASCGGGCAGGTGTCAGAC--TATACATYGTGGTACCA------CAGAGTCC 356640 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 | |||||||| ||| ||||| || ||| | | | ||| | | | |||| || Sbjct 356641 TSTGTTTTTAATAAGCAGTCACTACCCCCRRGTATGTGCCGCTTGCCTAA--TCAAAACA 356698 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | | |||| ||||| |||| |||||||||||||||||| |||| | |||| Sbjct 356699 TAGGAGACCA---------CCCCTCCTCCAGAAGTTACGGGGCCATTTCGCCGCACTCCT 356749 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | || ||| | | | | || || ||| |||||| || |||||| || |||| | Sbjct 356750 TCGACATGTTTCTCTCAAGCACCCTAATATACTCTACTTGTTCACCTGCRTCTGTTTGGG 356809 Query 246 GTA 248 ||| Sbjct 356810 GTA 356812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694391584523