Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16]
1,251 sequences; 1,874,765,253 total letters
Query= AAMG01000538.1
Length=248
Score E
Sequences producing significant alignments: (Bits) Value
seq1251 152 7e-35
seq1056 143 4e-32
seq2 141 1e-31
seq201 96.9 5e-18
seq627 89.7 7e-16
seq557 87.8 2e-15
seq621 86.0 9e-15
seq15 84.2 3e-14
seq1008 75.2 2e-11
seq1019 73.4 5e-11
>seq1251
Length=396947
Score = 152 bits (168), Expect = 7e-35
Identities = 181/243 (74%), Gaps = 12/243 (5%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | ||
Sbjct 208879 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 208937
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
|||||||||| |||||||||||| ||| || | | ||| | | | |||| |
Sbjct 208938 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 208995
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || | ||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 208996 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 209046
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
| || |||| | | | |||| |||||| |||||| || ||||||||||||||| |
Sbjct 209047 TCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGG 209106
Query 246 GTA 248
|||
Sbjct 209107 GTA 209109
Score = 152 bits (168), Expect = 7e-35
Identities = 181/243 (74%), Gaps = 12/243 (5%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | ||
Sbjct 352028 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 352086
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
|||||||||| |||||||||||| ||| || | | ||| | | | |||| |
Sbjct 352087 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 352144
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || | ||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 352145 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 352195
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
| || |||| | | | |||| |||||| |||||| || ||||||||||||||| |
Sbjct 352196 TCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGG 352255
Query 246 GTA 248
|||
Sbjct 352256 GTA 352258
>seq1056
Length=2373031
Score = 143 bits (158), Expect = 4e-32
Identities = 178/243 (73%), Gaps = 12/243 (5%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
||||||| ||||||||| | ||||| | ||||||||| ||||| ||| ||| | ||
Sbjct 1046573 CCTTCCAGCACCGGGCARGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCARAGTCC 1046631
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
|||||||||| |||||||||| | ||| || | | ||| | | | |||| |
Sbjct 1046632 TGTGTTTTTAATAAACAGTCGYTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 1046689
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || | ||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1046690 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 1046740
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
| || |||| | | | |||| |||||| || ||| || ||||||||||||||| |
Sbjct 1046741 TCGACATGGTTCTCTCAAGCGCCCTAGTATACTYTACTTGTTCACCTGTGTCGGTTTGGG 1046800
Query 246 GTA 248
|||
Sbjct 1046801 GTA 1046803
>seq2
Length=36374806
Score = 141 bits (156), Expect = 1e-31
Identities = 177/243 (73%), Gaps = 20/243 (8%)
Strand=Plus/Minus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| ||||||||||||| || |||||| | ||||| | ||| || ||||
Sbjct 35934940 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 35934882
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
||||||||| |||||||||||| || || |||||||| ||
Sbjct 35934881 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 35934835
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || | |||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 35934834 TTGTG----AG--GGGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 35934781
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
|| | |||| | || | ||| ||||||||||||| |||||||||||||||| |
Sbjct 35934780 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 35934721
Query 246 GTA 248
|||
Sbjct 35934720 GTA 35934718
Score = 82.4 bits (90), Expect = 1e-13
Identities = 73/90 (81%), Gaps = 1/90 (1%)
Strand=Plus/Minus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
||||||| ||||||||||| ||||| | || |||||| ||||| ||| ||| | ||
Sbjct 26623420 CCTTCCAGCACCGGGCAGGTGTCAGACTCTAAACATCGTGTTACCA-CTTAGCAGAGTCC 26623362
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCT 95
|||||||||| |||||||||||| ||| ||
Sbjct 26623361 TGTGTTTTTAATAAACAGTCGCTACCCCCT 26623332
>seq201
Length=1705435
Score = 96.9 bits (106), Expect = 5e-18
Identities = 82/101 (81%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201
|||||| ||||||||||||||||||||||||||||||||||| || | || |||| | |
Sbjct 1259151 GCACCCTTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCTTTCAACATGGTTCTCTC 1259210
Query 202 GAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242
| || | |||||| |||||| || |||| ||| |||||
Sbjct 1259211 AAGCGTCCTAGTATACTCTACTTGTTCACCGCTGTTGGTTT 1259251
>seq627
Length=1416070
Score = 89.7 bits (98), Expect = 7e-16
Identities = 70/84 (83%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201
||||||||||||| |||||||||||||||||||||||||||| || | || |||| | |
Sbjct 1040829 GCACCCCTTCTCCAGAAGTTACGGGGCCATTTTGCCGAATTCTTTCAACATGGTTCTCTC 1040888
Query 202 GAACGCCTTAGTATTCTCTACCTG 225
| || | |||||| |||||| ||
Sbjct 1040889 AAGCGTCATAGTATACTCTACTTG 1040912
>seq557
Length=2969275
Score = 87.8 bits (96), Expect = 2e-15
Identities = 81/103 (79%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 146 CCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAAC 205
||||||||||||||||||||||| ||||| | || ||||||| | |||| | | |
Sbjct 136882 CCCTTCTCCCGAAGTTACGGGGCTATTTTTCTGAGTTCCTTAGAGAGAGTTGTCTCACGC 136823
Query 206 GCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
||| ||||||||||||| ||||||||||| |||| ||||
Sbjct 136822 CCCTAGGTATTCTCTACCTACCCACCTGTGTCTGTTTCGGGTA 136780
>seq621
Length=388750
Score = 86.0 bits (94), Expect = 9e-15
Identities = 166/243 (68%), Gaps = 14/243 (6%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
||||||| || |||||||| ||||| | ||||||| | |||| | | ||| | ||
Sbjct 355171 CCTTCCAGCAGCGGGCAGGTGTCAGAC--TATACATTGTGGTACCA-CATAGCAGAGTCC 355227
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
|||||||||| ||| ||||| || ||| | | | | ||| | | | |||| ||
Sbjct 355228 TGTGTTTTTAATAAGCAGTCACTACCCCCGAGTATGTGCCGCTTGCCTAA--TCAAAACA 355285
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| | |||| ||||| |||| |||||||||||||||||| |||| | ||||
Sbjct 355286 TAGGAGACCA---------CCCCTCCTCCAGAAGTTACGGGGCCATTTCGCCGCACTCCT 355336
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
| || ||| | | | | || || ||| |||||| || |||||| ||| |||| |
Sbjct 355337 TCGACATGTTTCTCTCAAGCACCCTAATATACTCTACTTGTTCACCTGCGTCTGTTTGGG 355396
Query 246 GTA 248
|||
Sbjct 355397 GTA 355399
>seq15
Length=47181002
Score = 84.2 bits (92), Expect = 3e-14
Identities = 87/110 (79%), Gaps = 5/110 (5%)
Strand=Plus/Plus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
||||||| ||||||| ||||||||| || ||||||| || ||||||| | |||| |
Sbjct 18632482 GGCACCC-TTCTCCCAAAGTTACGGTGCTATTTTGCTGAGTTCCTTAGAGAGAGTTGTCT 18632540
Query 201 CGAACGCCT-TAG-TATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
| |||||| ||| |||||||||||| |||||| ||||| ||| ||||
Sbjct 18632541 C--ACGCCTCTAGGTATTCTCTACCTACCCACCTRTGTCGATTTTGGGTA 18632588
>seq1008
Length=1203078
Score = 75.2 bits (82), Expect = 2e-11
Identities = 74/97 (76%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 146 CCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAAC 205
|||||||| |||||||| |||| |||||||||| ||| ||| | |||| | || |
Sbjct 782904 CCCTTCTCYTGAAGTTACAGGGCTATTTTGCCGAGTTCRTTAGAGAGAGTTGTCTCGCGC 782845
Query 206 GCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242
| | || |||||||||| | ||||||||||||||
Sbjct 782844 CCYTAGGTGTTCTCTACCTACCGACCTGTGTCGGTTT 782808
>seq1019
Length=388313
Score = 73.4 bits (80), Expect = 5e-11
Identities = 160/243 (66%), Gaps = 19/243 (8%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
||||||| || |||||||| ||||| | ||||||| | |||| || | ||
Sbjct 356589 CCTTCCAGCASCGGGCAGGTGTCAGAC--TATACATYGTGGTACCA------CAGAGTCC 356640
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
| |||||||| ||| ||||| || ||| | | | ||| | | | |||| ||
Sbjct 356641 TSTGTTTTTAATAAGCAGTCACTACCCCCRRGTATGTGCCGCTTGCCTAA--TCAAAACA 356698
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| | |||| ||||| |||| |||||||||||||||||| |||| | ||||
Sbjct 356699 TAGGAGACCA---------CCCCTCCTCCAGAAGTTACGGGGCCATTTCGCCGCACTCCT 356749
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
| || ||| | | | | || || ||| |||||| || |||||| || |||| |
Sbjct 356750 TCGACATGTTTCTCTCAAGCACCCTAATATACTCTACTTGTTCACCTGCRTCTGTTTGGG 356809
Query 246 GTA 248
|||
Sbjct 356810 GTA 356812
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694391584523
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