Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq1251 91.5 1e-16 seq2 87.8 2e-15 seq1056 82.4 7e-14 >seq1251 Length=396947 Score = 91.5 bits (100), Expect = 1e-16 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | ||||||||||||||||||||||| ||||||| || | || || Sbjct 208972 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 208913 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149 |||||| || |||| |||||||||||| ||||||| Sbjct 208912 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGT 208878 Score = 91.5 bits (100), Expect = 1e-16 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | ||||||||||||||||||||||| ||||||| || | || || Sbjct 352121 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 352062 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149 |||||| || |||| |||||||||||| ||||||| Sbjct 352061 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGT 352027 >seq2 Length=36374806 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 35934839 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 35934898 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 35934899 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 35934944 Score = 86.0 bits (94), Expect = 6e-15 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | ||||||||||||||||||||||| ||||||| || | || || Sbjct 26623327 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 26623386 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149 || ||| || |||| |||||||||||| ||||||| Sbjct 26623387 GTTTAGAGTCTGACACCTGCCCGGTGCTGGAAGGT 26623421 >seq1056 Length=2373031 Score = 82.4 bits (90), Expect = 7e-14 Identities = 74/95 (78%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | |||||||||||||||||||||| ||| ||| || | || || Sbjct 1046666 ATACCAGGGGGTARCGACTGTTTATTAAAAACACAGGACTYTGCTAAGTGGTAACACGAT 1046607 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149 |||||| || |||| | |||||||||| ||||||| Sbjct 1046606 GTATAGAGTCTGACACYTGCCCGGTGCTGGAAGGT 1046572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476794221631