Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq2 264 3e-68 seq1251 248 2e-63 seq1056 237 4e-60 seq439 179 9e-43 seq17 134 3e-29 seq13 98.7 3e-18 seq6 98.7 3e-18 seq557 75.2 3e-11 seq15 75.2 3e-11 seq9 75.2 3e-11 >seq2 Length=36374806 Score = 264 bits (292), Expect = 3e-68 Identities = 307/418 (73%), Gaps = 27/418 (6%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| ||| |||||| Sbjct 35935130 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 35935071 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 35935070 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 35935011 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | ||||||||||||||| |||||||||||| || ||| | | | || | ||| Sbjct 35935010 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 35934951 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||||||||| |||||||||||| ||| |||| | ||| || ||| Sbjct 35934950 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 35934891 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || ||| |||||||||| ||||||||||| |||||||| || ||||| Sbjct 35934890 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC------CC 35934837 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 ||| ||| ||| | ||||||||||||||||||| || || Sbjct 35934836 CTTTGTGAG-----------------GGGGCACCCCTTCTCCCGAAGTTACGGGGCTATT 35934794 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||||| |||||||| ||||| |||| || ||| ||||||||||||| | |||| Sbjct 35934793 TTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 35934736 Score = 134 bits (148), Expect = 3e-29 Identities = 113/139 (81%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 27 ATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCA 86 || || ||||||| || ||| ||||||| ||| |||||||| | |||||||| Sbjct 6148585 ATGTCTATTTCACCAAGCCTCTTTCCGAGACAGTGCCCAGATCGTTACTCATTTCGTGCA 6148644 Query 87 GGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCC 146 ||| |||||||| |||||||||||||| ||||||||||||| |||| |||||||| ||| Sbjct 6148645 GGTTGGAACTTATTCGACAAGGAATTTCTCTACCTTAGGACCATTATAGTTACGGCTGCC 6148704 Query 147 GTTTACCGGGGCTTCGATC 165 ||| ||||||||||| ||| Sbjct 6148705 GTTCACCGGGGCTTCAATC 6148723 Score = 86.0 bits (94), Expect = 2e-14 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 198 ACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGC 257 ||||||| |||||||||||| |||| || ||| || || || | || ||||||| | Sbjct 26623421 ACCTTCCAGCACCGGGCAGGTGTCAGACTCTAAACATCGTGTTACCACTTAGCAGAGTCC 26623362 Query 258 TGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTAT 292 |||||||||||||||||||||| | |||||||| Sbjct 26623361 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTAT 26623327 Score = 84.2 bits (92), Expect = 6e-14 Identities = 77/99 (78%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 || || || || || ||| |||| |||||| | |||||| |||||| ||||| ||||| Sbjct 4820306 ATTGTCACACCTTTTGTGTGGGTCRAAACTTATCGGACAAGAAATTTCACTACCKTAGGA 4820365 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATC 165 | |||| |||| | ||||||||||||||| |||| || Sbjct 4820366 TCATTATAGTTATGACCGCCGTTTACCGGGATTTCGTTC 4820404 >seq1251 Length=396947 Score = 248 bits (274), Expect = 2e-63 Identities = 302/412 (73%), Gaps = 21/412 (5%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||| | ||| | |||||||||| || Sbjct 208693 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 208752 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 208753 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 208812 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 | |||| ||||| ||||||||||||||||||||| || | ||||| || | || Sbjct 208813 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTT----ATAAC--AC 208866 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246 | | ||||||| |||||||||||| |||| || |||||| || || | | Sbjct 208867 TTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACT 208926 Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATG 306 | ||||||| ||||||||||||||||||||||| | |||||||| | | | | | Sbjct 208927 TAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTA 208986 Query 307 AGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCT 366 | | | || || |||| ||||||||||||||||||| | | Sbjct 208987 ATCAAA---AGATAGGAGAGCACC------------CCTTCTCCCGAAGTTACGGGGTCA 209031 Query 367 TTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418 ||||||| ||||||||| | ||||||||||||||| | |||| |||||| Sbjct 209032 TTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTAC 209083 Score = 248 bits (274), Expect = 2e-63 Identities = 302/412 (73%), Gaps = 21/412 (5%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||| | ||| | |||||||||| || Sbjct 351842 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 351901 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 351902 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 351961 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 | |||| ||||| ||||||||||||||||||||| || | ||||| || | || Sbjct 351962 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTT----ATAAC--AC 352015 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246 | | ||||||| |||||||||||| |||| || |||||| || || | | Sbjct 352016 TTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACT 352075 Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATG 306 | ||||||| ||||||||||||||||||||||| | |||||||| | | | | | Sbjct 352076 TAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTA 352135 Query 307 AGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCT 366 | | | || || |||| ||||||||||||||||||| | | Sbjct 352136 ATCAAA---AGATAGGAGAGCACC------------CCTTCTCCCGAAGTTACGGGGTCA 352180 Query 367 TTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418 ||||||| ||||||||| | ||||||||||||||| | |||| |||||| Sbjct 352181 TTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTAC 352232 >seq1056 Length=2373031 Score = 237 bits (262), Expect = 4e-60 Identities = 298/412 (72%), Gaps = 21/412 (5%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||| | ||| | |||||||||| || Sbjct 1046387 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 1046446 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 1046447 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 1046506 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 | |||| ||||| ||||||||||||||||||||| || | ||||| || | || Sbjct 1046507 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTT----ATAAC--AC 1046560 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246 | | ||||||| |||||||||| | |||| || |||||| || || | | Sbjct 1046561 TTCTCCTTCCGACCTTCCAGCACCGGGCARGTGTCAGACTCTATACATCGTGTTACCACT 1046620 Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATG 306 | ||| ||| |||||||||||||||||||||| | |||||||| | | | | | Sbjct 1046621 TAGCARAGTCCTGTGTTTTTAATAAACAGTCGYTACCCCCTGGTATGTGCCGCTTTCCTA 1046680 Query 307 AGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCT 366 | | | || || |||| ||||||||||||||||||| | | Sbjct 1046681 ATCAAA---AGATAGGAGAGCACC------------CCTTCTCCCGAAGTTACGGGGTCA 1046725 Query 367 TTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418 ||||||| ||||||||| | ||||||||||||||| | |||| || ||| Sbjct 1046726 TTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTATACTYTAC 1046777 >seq439 Length=4537371 Score = 179 bits (198), Expect = 9e-43 Identities = 202/270 (75%), Gaps = 4/270 (1%) Strand=Plus/Minus Query 14 CATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTA 73 |||||||||| || || ||||||| ||| ||| |||| || ||| ||||||| Sbjct 4498975 CATCTTCACAAACATGTCTATTTCACCGAGCCTCTCTCTGAGATAGTGCCCAGATCGTTA 4498916 Query 74 CGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTAT 133 |||| ||| ||| |||| |||| ||||||| |||||||||| ||||||||||| |||||| Sbjct 4498915 CGCCTTTCATGCGGGTCAGAACATACCCGATAAGGAATTTCACTACCTTAGGAGCGTTAT 4498856 Query 134 TGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCCC 189 |||||| ||||||| |||||||||||| || ||| | | |||| | ||| Sbjct 4498855 AGTTACGATCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTATCATTAGGTCACCAA 4498796 Query 190 ATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTG 249 | || |||||||||||| ||| |||||||| ||| ||| | ||| || |||| Sbjct 4498795 CTTCCTTGACCTTCCGGCACTGGGTAGGCGTCAACCCCCATATATGGTCTTACGACTTTG 4498736 Query 250 CAGAGTGCTGTGTTTTTAATAAACAGTCGC 279 ||||| || ||||||| ||||||||||| Sbjct 4498735 CAGAGACCTATGTTTTTGGTAAACAGTCGC 4498706 >seq17 Length=24923725 Score = 134 bits (148), Expect = 3e-29 Identities = 121/152 (80%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 14 CATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTA 73 |||||||||| || || ||||||| ||| ||| |||| || ||| ||||||| Sbjct 4470790 CATCTTCACAAACATGTCTATTTCACCGAGCCTCTCTCTGAGATAGTGCCCAGATCGTTA 4470731 Query 74 CGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTAT 133 |||| ||| || |||| |||| ||||||| |||||||||| ||||||||||| |||||| Sbjct 4470730 CGCCTTTCATGTGGGTCAGAACATACCCGATAAGGAATTTCACTACCTTAGGAGCGTTAT 4470671 Query 134 TGTTACGGCCGCCGTTTACCGGGGCTTCGATC 165 |||||| ||||||| |||||||||||| || Sbjct 4470670 AGTTACGATCGCCGTTCACCGGGGCTTCGGTC 4470639 >seq13 Length=34719086 Score = 98.7 bits (108), Expect = 3e-18 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||| |||| | ||||||| || | ||||||||| |||||||||||||||||||||||| Sbjct 22008794 ATCATTACTCATTTCGTGCGAGTTGAAACTTACCCAACAAGGAATTTCGCTACCTTAGGA 22008735 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATC 165 || |||| |||| ||| ||| || | ||||| ||| ||| Sbjct 22008734 CCATTATAGTTATGGCTGCCATTCATCGGGGTTTCAATC 22008696 >seq6 Length=25473135 Score = 98.7 bits (108), Expect = 3e-18 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||| |||| | ||||||| || | ||||||||| |||||||||||||||||||||||| Sbjct 7126223 ATCATTACTCATTTCGTGCGAGTTGAAACTTACCCAACAAGGAATTTCGCTACCTTAGGA 7126164 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATC 165 || |||| |||| ||| ||| || | ||||| ||| ||| Sbjct 7126163 CCATTATAGTTATGGCTGCCATTCATCGGGGTTTCAATC 7126125 >seq557 Length=2969275 Score = 75.2 bits (82), Expect = 3e-11 Identities = 67/84 (80%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 343 CCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCG 402 ||||||||||||||||||| || |||| | |||||||| ||||| ||||| || Sbjct 136881 CCTTCTCCCGAAGTTACGGGGCTATTTTTCTGAGTTCCTTAGAGAGAGTTGTCTCACGCC 136822 Query 403 CCTTGGTATTCTCTACCCAACCAC 426 ||| ||||||||||||| | |||| Sbjct 136821 CCTAGGTATTCTCTACCTACCCAC 136798 >seq15 Length=47181002 Score = 75.2 bits (82), Expect = 3e-11 Identities = 67/84 (80%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 343 CCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCG 402 ||||||||| |||||||||||| |||||| |||||||| ||||| ||||| || Sbjct 18632487 CCTTCTCCCAAAGTTACGGTGCTATTTTGCTGAGTTCCTTAGAGAGAGTTGTCTCACGCC 18632546 Query 403 CCTTGGTATTCTCTACCCAACCAC 426 || ||||||||||||| | |||| Sbjct 18632547 TCTAGGTATTCTCTACCTACCCAC 18632570 >seq9 Length=33717675 Score = 75.2 bits (82), Expect = 3e-11 Identities = 61/74 (82%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 71 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 130 |||| || || ||| ||| | || |||||||| || |||||||||||||||| |||||| Sbjct 7864445 TTACACCTTTTGTGAGGGTTGAAATTTACCCGATAAAGAATTTCGCTACCTTAAGACCGT 7864504 Query 131 TATTGTTACGGCCG 144 ||| |||||| ||| Sbjct 7864505 TATAGTTACGACCG 7864518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260784227392