Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1140 297 3e-78 seq749 297 3e-78 seq625 297 3e-78 seq232 297 3e-78 seq111 297 3e-78 seq982 293 4e-77 seq6 181 2e-43 seq7 102 1e-19 >seq1140 Length=8567921 Score = 297 bits (328), Expect = 3e-78 Identities = 224/261 (86%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4812782 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 4812841 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 4812842 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 4812899 Query 120 CCACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 || | | || | | |||| |||||||| | ||||||||||||||| ||||| Sbjct 4812900 CCGCGGAGGATGACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 4812959 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 4812960 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 4813019 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| ||| |||||| Sbjct 4813020 AGAAAGAGCTCTCAGTCTGTC 4813040 >seq749 Length=8889691 Score = 297 bits (328), Expect = 3e-78 Identities = 224/261 (86%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4869741 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 4869800 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 4869801 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 4869858 Query 120 CCACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 || | | || | | |||| |||||||| | ||||||||||||||| ||||| Sbjct 4869859 CCGCGGAGGATGACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 4869918 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 4869919 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 4869978 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| ||| |||||| Sbjct 4869979 AGAAAGAGCTCTCAGTCTGTC 4869999 >seq625 Length=5148542 Score = 297 bits (328), Expect = 3e-78 Identities = 224/261 (86%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 232041 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 232100 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 232101 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 232158 Query 120 CCACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 || | | || | | |||| |||||||| | ||||||||||||||| ||||| Sbjct 232159 CCGCGGAGGATGACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 232218 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 232219 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 232278 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| ||| |||||| Sbjct 232279 AGAAAGAGCTCTCAGTCTGTC 232299 >seq232 Length=8559335 Score = 297 bits (328), Expect = 3e-78 Identities = 224/261 (86%), Gaps = 6/261 (2%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8312222 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 8312163 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 8312162 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 8312105 Query 120 CCACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 || | | || | | |||| |||||||| | ||||||||||||||| ||||| Sbjct 8312104 CCGCGGAGGATGACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 8312045 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 8312044 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 8311985 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| ||| |||||| Sbjct 8311984 AGAAAGAGCTCTCAGTCTGTC 8311964 >seq111 Length=1131199 Score = 297 bits (328), Expect = 3e-78 Identities = 224/261 (86%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 230828 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 230887 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 230888 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 230945 Query 120 CCACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 || | | || | | |||| |||||||| | ||||||||||||||| ||||| Sbjct 230946 CCGCGGAGGATGACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 231005 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 231006 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 231065 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| ||| |||||| Sbjct 231066 AGAAAGAGCTCTCAGTCTGTC 231086 >seq982 Length=3776313 Score = 293 bits (324), Expect = 4e-77 Identities = 223/261 (85%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 261561 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 261620 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 261621 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 261678 Query 120 CCACCAACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 || | | || | | |||| |||||||| | | ||||||||||||| ||||| Sbjct 261679 CCGCGGAGGATGACCTCCGCATAGCTAGTTAGCAGGCTGARGTCTCGTTCGTTAACGGAA 261738 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 261739 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 261798 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| ||| |||||| Sbjct 261799 AGAAAGAGCTCTCAGTCTGTC 261819 >seq6 Length=25473135 Score = 181 bits (200), Expect = 2e-43 Identities = 169/213 (79%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 50 GGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCA--ATAGTCCCT 107 ||||||||||| | |||||||||| ||||||| | | | || |||| ||| | ||| Sbjct 15522202 GGGCATCACAGGCATGTTATTGCCYCAAACTTTCTTGGCCT--AAGCGGTCATAATACCT 15522145 Query 108 CTAAGAAGCCAGCCACCAACCATAGTCGATGGGG--CTATTTAGCAGGTTAAGGTCTCGT 165 |||||||| | | | | || | ||| ||| |||||||||| ||||||| | Sbjct 15522144 TTAAGAAGCTGGTCGCGGAGGATGACCTATGCATACCTAGTTAGCAGGTTGAGGTCTCAT 15522085 Query 166 TCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCA 225 || ||| ||||||||| |||||||||||||||||||||||||||| |||||||||||| Sbjct 15522084 TCRTTAATGGAATTAACTGGACAAATCACTCCACCAACTAAGAACGGTCATGCACCACCA 15522025 Query 226 CCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||| | |||||||| Sbjct 15522024 CCCATAGAATCAAGAAAGAGCTTTTAATCTGTC 15521992 >seq7 Length=26383534 Score = 102 bits (112), Expect = 1e-19 Identities = 59/61 (97%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 198 ACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 19444326 ACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGT 19444385 Query 258 C 258 | Sbjct 19444386 C 19444386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796790343531