Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq799 120 6e-25 seq17 114 3e-23 seq6 114 3e-23 seq1251 111 3e-22 seq1056 111 3e-22 seq4 111 3e-22 seq746 107 4e-21 seq322 107 4e-21 seq948 84.2 4e-14 seq249 84.2 4e-14 seq673 80.6 5e-13 seq748 78.8 2e-12 seq12 78.8 2e-12 seq501 77.0 6e-12 seq324 77.0 6e-12 >seq799 Length=9239260 Score = 120 bits (132), Expect = 6e-25 Identities = 104/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 |||||||||||| ||||| | |||||||| | |||| | ||| |||||||||||||||| Sbjct 2530664 AGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTC 2530605 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330 | |||| ||||||| || ||| || ||||| | |||| |||| | ||||||||| ||| Sbjct 2530604 TGCCTTAGTGATCCGACGATGCCGAGTGGAAGGACCGTTGCTCAATGGATAAAAGTTACT 2530545 Query 331 CTGGGGATA 339 || ||||| Sbjct 2530544 CTAAGGATA 2530536 >seq17 Length=24923725 Score = 114 bits (126), Expect = 3e-23 Identities = 140/193 (73%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC-AGCTTGGATGGAAACCATGC 206 |||||||||| |||| ||||||| ||||| | |||| ||| || | | | | Sbjct 4471038 GCCTCCCAAAAGGTAATGGAGGCGTGCAAAGGTTTCCTCGAGCCARA--GGGAGGCMTTC 4471095 Query 207 GCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAA 266 | | | |||||||| ||| | | |||||||| | |||| | ||| | |||||||||| Sbjct 4471096 G---ASTACAAAGGCAGAAGAGAGCTTGACTGCAAGACCCACCYGTCAARCAGGGACGAA 4471152 Query 267 AGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGC 326 |||||| |||| ||||| | ||| || ||||| |||| || ||| || |||||||| Sbjct 4471153 AGTCGGCCTTAGTGATCYGATRGTGTCGARTGGAAGGGCCATCTCTCAACAGATAAAAGT 4471212 Query 327 TACCCTGGGGATA 339 ||| || |||||| Sbjct 4471213 TACTCTAGGGATA 4471225 >seq6 Length=25473135 Score = 114 bits (126), Expect = 3e-23 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291 |||||||| | |||| | ||| |||||||| ||||||||| |||| ||||||| ||||| Sbjct 22651757 TTGACTGCAAGACCCACCCGTCGAGCAGGGATGAAAGTCGGCCTTAGTGATCCGACGGTG 22651698 Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | || ||||| ||||||||||| |||||||||| ||| || |||||| Sbjct 22651697 CCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAATTACTCTAGGGATA 22651650 >seq1251 Length=396947 Score = 111 bits (122), Expect = 3e-22 Identities = 165/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 ||||||| || || ||| ||||| ||||||||| |||||| ||||||||||||||| Sbjct 208524 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 208465 Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGC-GCACAGTGCAAAGGCAAAAGG 227 | | ||| || |||| ||| ||| ||| | || | || || | ||| Sbjct 208464 TGTGCGAAGGTAGGCTCAAGCTAAGATTC------TGCTGTTGAGCGTAATGGTATAAGC 208411 Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287 || |||||| || ||| | ||| | ||| |||||||||||| | || |||||||| Sbjct 208410 CTGCCTGACTGTGAGACCTACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGG 208351 Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || | | ||||| ||| ||||||||||||| |||| ||| | ||||||| Sbjct 208350 AGTCCCGTGTGGAAGGGCTCTCGCTCGACGGATCAAAGGTACGCCGGGGATA 208299 Score = 111 bits (122), Expect = 3e-22 Identities = 165/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 ||||||| || || ||| ||||| ||||||||| |||||| ||||||||||||||| Sbjct 351673 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 351614 Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGC-GCACAGTGCAAAGGCAAAAGG 227 | | ||| || |||| ||| ||| ||| | || | || || | ||| Sbjct 351613 TGTGCGAAGGTAGGCTCAAGCTAAGATTC------TGCTGTTGAGCGTAATGGTATAAGC 351560 Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287 || |||||| || ||| | ||| | ||| |||||||||||| | || |||||||| Sbjct 351559 CTGCCTGACTGTGAGACCTACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGG 351500 Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || | | ||||| ||| ||||||||||||| |||| ||| | ||||||| Sbjct 351499 AGTCCCGTGTGGAAGGGCTCTCGCTCGACGGATCAAAGGTACGCCGGGGATA 351448 >seq1056 Length=2373031 Score = 111 bits (122), Expect = 3e-22 Identities = 165/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 ||||||| || || ||| ||||| ||||||||| |||||| ||||||||||||||| Sbjct 1046218 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 1046159 Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGC-GCACAGTGCAAAGGCAAAAGG 227 | | ||| || |||| ||| ||| ||| | || | || || | ||| Sbjct 1046158 TGTGCGAAGGTAGGCTCAAGCTAAGATTC------TGCTGTTGAGCGTAATGGTATAAGC 1046105 Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287 || |||||| || ||| | ||| | ||| |||||||||||| | || |||||||| Sbjct 1046104 CTGCCTGACTGTGAGACCTACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGG 1046045 Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || | | ||||| ||| ||||||||||||| |||| ||| | ||||||| Sbjct 1046044 AGTCCCGTGTGGAAGGGCTCTCGCTCGACGGATCAAAGGTACGCCGGGGATA 1045993 >seq4 Length=23020739 Score = 111 bits (122), Expect = 3e-22 Identities = 100/126 (79%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 213 TGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAG-TCTAGCAGGGACGAAAGTCG 271 |||||||||||||||| | |||||||| | |||| | | || |||||||||||| |||| Sbjct 6652535 TGCAAAGGCAAAAGGGAGCTTGACTGCAAGACCCACCATATCGAGCAGGGACGAATGTCG 6652476 Query 272 GGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCC 331 | ||| ||||||| ||| || ||||| |||| |||||| ||||||||||| ||| Sbjct 6652475 GCTTTAGTGATCCGATARTGCCGAGTGGAAGGGCCATCGCTCAACGGATAAAAGTTACTG 6652416 Query 332 TGGGGA 337 | |||| Sbjct 6652415 TRGGGA 6652410 >seq746 Length=2365673 Score = 107 bits (118), Expect = 4e-21 Identities = 102/129 (79%), Gaps = 1/129 (1%) Strand=Plus/Minus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 |||||||||| ||||| | | |||||||| | |||| | | || || ||||||||| || Sbjct 1182660 AGTGCAAAGGTAAAAGAGAGCTTGACTGCAAGACCCACTATTCGAG-AGGGACGAAGGTT 1182602 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330 || |||| |||||||||||||| || ||||| || |||| ||| || ||||||| ||| Sbjct 1182601 GGCCTTAGTGATCCGGCGGTGCCGAGTGGAAGGGGCGTCACTCAACAAATAAAAGTTACT 1182542 Query 331 CTGGGGATA 339 || ||||| Sbjct 1182541 CTAAGGATA 1182533 >seq322 Length=2589544 Score = 107 bits (118), Expect = 4e-21 Identities = 102/129 (79%), Gaps = 1/129 (1%) Strand=Plus/Minus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 |||||||||| ||||| | | |||||||| | |||| | | || || ||||||||| || Sbjct 1408210 AGTGCAAAGGTAAAAGAGAGCTTGACTGCAAGACCCACTATTCGAG-AGGGACGAAGGTT 1408152 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330 || |||| |||||||||||||| || ||||| || |||| ||| || ||||||| ||| Sbjct 1408151 GGCCTTAGTGATCCGGCGGTGCCGAGTGGAAGGGGCGTCACTCAACAAATAAAAGTTACT 1408092 Query 331 CTGGGGATA 339 || ||||| Sbjct 1408091 CTAAGGATA 1408083 >seq948 Length=4341834 Score = 84.2 bits (92), Expect = 4e-14 Identities = 84/108 (78%), Gaps = 1/108 (1%) Strand=Plus/Minus Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291 |||| ||||| |||| | ||| |||| |||| |||||||| |||| ||||| | ||| Sbjct 2169909 TTGATTGCGAGACCCACCTGTCAAGCAAGGACAAAAGTCGGCCTTAGTGATCTAACAGTG 2169850 Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | ||||| || | | ||||||| ||||||||||| ||| || || ||| Sbjct 2169849 CCGAATGAAATGTC-GTCGCTCAACGGATAAAAGTTACTCTAGGTATA 2169803 >seq249 Length=4729507 Score = 84.2 bits (92), Expect = 4e-14 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 255 AGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCG 314 || ||||||||||||||| ||||||||| | |||||| || |||| ||||||||||| Sbjct 2892408 AGTAGGGACGAAAGTCGGCCTTAATGATTTGACGGTGCCGAGTGGATGGGCCGTCGCTCA 2892349 Query 315 ACGGATAAAAGCTA 328 ||||||||||| || Sbjct 2892348 ACGGATAAAAGTTA 2892335 >seq673 Length=4704030 Score = 80.6 bits (88), Expect = 5e-13 Identities = 61/74 (82%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 255 AGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCG 314 || ||||||||||||||| ||||||||| |||||| || |||| |||||||||| Sbjct 2899151 AGTAGGGACGAAAGTCGGCCTTAATGATTTRACGGTGCCGAGTGGAWGGGCCGTCGCTYA 2899210 Query 315 ACGGATAAAAGCTA 328 ||||||||||| || Sbjct 2899211 ACGGATAAAAGTTA 2899224 >seq748 Length=7954650 Score = 78.8 bits (86), Expect = 2e-12 Identities = 69/85 (81%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 255 AGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCG 314 || ||||||||||| ||| |||| ||||||| |||||| || ||||| || ||| ||| Sbjct 6117093 AGTAGGGACGAAAGCCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGGCGTTGCTGA 6117034 Query 315 ACGGATAAAAGCTACCCTGGGGATA 339 ||||||||||| || || |||||| Sbjct 6117033 ACGGATAAAAG-TATACTAGGGATA 6117010 >seq12 Length=31678690 Score = 78.8 bits (86), Expect = 2e-12 Identities = 69/85 (81%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 255 AGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCG 314 || ||||||||||| ||| |||| ||||||| |||||| || ||||| || ||| ||| Sbjct 29766125 AGTAGGGACGAAAGCCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGGCGTTGCTGA 29766066 Query 315 ACGGATAAAAGCTACCCTGGGGATA 339 ||||||||||| || || |||||| Sbjct 29766065 ACGGATAAAAG-TATACTAGGGATA 29766042 Score = 77.0 bits (84), Expect = 6e-12 Identities = 68/85 (80%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 255 AGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCG 314 || ||||||||||| ||| |||| ||||||| |||||| || ||||| || ||| ||| Sbjct 29763538 AGTAGGGACGAAAGYCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGGCGTTGCTGA 29763479 Query 315 ACGGATAAAAGCTACCCTGGGGATA 339 ||||||||||| || | |||||| Sbjct 29763478 ACGGATAAAAG-TATAYTAGGGATA 29763455 >seq501 Length=1008263 Score = 77.0 bits (84), Expect = 6e-12 Identities = 123/174 (71%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 129 CAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAG 188 |||||| || |||| |||||||||| ||||| ||| | ||||| | |||| | Sbjct 175994 CAGTTTCTATGAGGCGTAGGCCTCCCAAAAGGTAACATAGGGGTGCAAAGGTTTCCTCCG 175935 Query 189 CTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCT 247 ||||| | || | | ||| |||||||| ||||| | |||| ||| | |||| Sbjct 175934 GCCAAATGGAGATTG-GCCCTCGAGTTCAAAGGCAGAAGGGAGCTTGATTGCAAGACCCA 175876 Query 248 CAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAA 301 | ||| |||| ||||||||||| |||| ||||||| ||||| || ||||| Sbjct 175875 CCTGTCGAGCAAGGACGAAAGTCAACCTTAGTGATCCGATGGTGCAGAGTGGAA 175822 >seq324 Length=8003036 Score = 77.0 bits (84), Expect = 6e-12 Identities = 68/85 (80%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 255 AGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCG 314 || ||||||||||| ||| |||| ||||||| |||||| || ||||| || ||| ||| Sbjct 6149727 AGTAGGGACGAAAGYCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGGCGTTGCTGA 6149786 Query 315 ACGGATAAAAGCTACCCTGGGGATA 339 ||||||||||| || | |||||| Sbjct 6149787 ACGGATAAAAG-TATAYTAGGGATA 6149810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982387710176