Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq957 228 2e-57 seq1251 206 6e-51 seq438 141 2e-31 seq421 141 2e-31 seq16 141 2e-31 seq9 140 7e-31 seq11 138 2e-30 seq14 129 1e-27 seq7 129 1e-27 seq17 118 2e-24 seq12 105 1e-20 seq5 95.1 3e-17 seq1149 80.6 6e-13 >seq957 Length=3583874 Score = 228 bits (252), Expect = 2e-57 Identities = 257/337 (76%), Gaps = 21/337 (6%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 || || | ||| || |||||| | | |||||||||||| || ||||||||||||||| Sbjct 6050 TTCACGACCCGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCA 5993 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || ||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 5992 TTGCGGAAAWTTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 5933 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| |||||||||||||| |||||| ||| |||| |||||||||| ||| ||| |||||| Sbjct 5932 GTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCAC 5873 Query 182 CAACTAGCTAATCCGAC-CTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 ||||||||||||| ||| | || | | || || ||| || ||| ||| Sbjct 5872 CAACTAGCTAATCAGACGCGAGCCCCTCCT-----CG---GGC-----GGATTCCTCCTT 5826 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA- 299 | | | | | | || | ||||||||| |||||||| ||| | |||| | ||| Sbjct 5825 TTGCTCCTCAG-CCTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCYC--CCAA 5769 Query 300 -GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 ||||| ||| || || ||||||||||||||||| || Sbjct 5768 GGGCAGGTTCTTACGCGTTACTCACCCGTCCGCCACT 5732 >seq1251 Length=396947 Score = 206 bits (228), Expect = 6e-51 Identities = 180/220 (82%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 275772 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 275715 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| || Sbjct 275714 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 275655 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||||||| ||||||| || | ||| | | |||||| |||| |||||| Sbjct 275654 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 275595 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||||| ||||| | || ||||||||| | ||||| Sbjct 275594 GACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 275555 >seq438 Length=786927 Score = 141 bits (156), Expect = 2e-31 Identities = 107/126 (85%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 68 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACT 127 || ||| ||||||||||||||||||| |||||| | |||||||||||| | |||||| | Sbjct 333539 AAAATTTCCCACTGCTGCCTCCCGTATGAGTCTAGGCCGTGTCTCAGTCCTAGTGTGGTT 333598 Query 128 GATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTA 187 |||||||||||| |||||| ||| |||| || |||||| ||| ||| ||| |||||||| Sbjct 333599 GATCATCCTCTCGGACCAGCTACTGATCATCATCTTGGTAAGCTATTGCCTTACCAACTA 333658 Query 188 GCTAAT 193 |||||| Sbjct 333659 GCTAAT 333664 >seq421 Length=1359463 Score = 141 bits (156), Expect = 2e-31 Identities = 131/166 (79%), Gaps = 12/166 (7%) Strand=Plus/Plus Query 34 GGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCAC-----TGCTGCCTC 88 ||||||| || ||||||||| |||||||| || || |||| | || |||||| Sbjct 613984 GGCATTG-CTCTGTCAGGCTTTAGCCCATTGYKGAAAATCCCCCCCCCCCTTGTTGCCTC 614042 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| ||| |||||||||||||| ||||| | Sbjct 614043 CCGTAGGAGTCTGGGCCGTGTCTCAGT------GTGGCTGATCATCCTCTCGGACCAACT 614096 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194 || |||| |||||||||| || ||| || |||||||||||||||| Sbjct 614097 ACTGATCATCGCCTTGGTAAGTTATTGCCCCACCAACTAGCTAATC 614142 >seq16 Length=20664393 Score = 141 bits (156), Expect = 2e-31 Identities = 107/126 (85%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 68 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACT 127 || ||| ||||||||||||||||||| |||||| | |||||||||||| | |||||| | Sbjct 20117101 AAAATTTCCCACTGCTGCCTCCCGTATGAGTCTAGGCCGTGTCTCAGTCCTAGTGTGGTT 20117160 Query 128 GATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTA 187 |||||||||||| |||||| ||| |||| || |||||| ||| ||| ||| |||||||| Sbjct 20117161 GATCATCCTCTCGGACCAGCTACTGATCATCATCTTGGTAAGCTATTGCCTTACCAACTA 20117220 Query 188 GCTAAT 193 |||||| Sbjct 20117221 GCTAAT 20117226 Score = 100 bits (110), Expect = 6e-19 Identities = 87/104 (84%), Gaps = 3/104 (3%) Strand=Plus/Plus Query 84 GCCTCCCGTAGGAGTCTGGACC-GTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGA 142 ||||||| ||||||||||| || |||||||||| |||| ||| ||||||||| | ||| | Sbjct 17684553 GCCTCCC-TAGGAGTCTGGGCCCGTGTCTCAGTCCCAGCGTGGCTGATCATCTT-TCACA 17684610 Query 143 CCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACT 186 ||| ||| |||| || ||||||| ||| ||| ||||||||||| Sbjct 17684611 CCACCTACTGATCATCTCCTTGGTAAGCTATTGCCTCACCAACT 17684654 Score = 96.9 bits (106), Expect = 7e-18 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 97 GTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCG 156 || ||| | |||||||| | | |||||| |||| |||||||||||||| ||| |||| Sbjct 19913545 GTTTGGGCAGTGTCTCAATCCTAGTGTGGTTGATTATCCTCTCAGACCAACTACTGATCA 19913486 Query 157 TCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGA 197 |||||||||| ||| ||| ||||| |||||| |||||| || Sbjct 19913485 TCGCCTTGGTAAGCTATTGCCTCATCAACTATCTAATCAGA 19913445 >seq9 Length=33717675 Score = 140 bits (154), Expect = 7e-31 Identities = 130/165 (79%), Gaps = 11/165 (7%) Strand=Plus/Plus Query 34 GGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCAC----TGCTGCCTCC 89 ||||||| || ||||||||| |||||||| || || |||| | | ||||||| Sbjct 179496 GGCATTG-CTCTGTCAGGCTTTAGCCCATTGYKGAAAATCCCCCCCCCCYTRTTGCCTCC 179554 Query 90 CGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTA 149 ||||||||||||| |||||||||||| ||| |||||||||||||| ||||| || Sbjct 179555 CGTAGGAGTCTGGGCCGTGTCTCAGT------GTGGCTGATCATCCTCTCGGACCAACTA 179608 Query 150 CGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194 | |||| |||||||||| || ||| || |||||||||||||||| Sbjct 179609 CTGATCATCGCCTTGGTAAGTTATTGCCCCACCAACTAGCTAATC 179653 >seq11 Length=35299535 Score = 138 bits (152), Expect = 2e-30 Identities = 129/165 (78%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||| ||||||| || ||| |||| | ||||| | || |||||||| ||||||||| Sbjct 17831235 CACGTGGCATTG-CTCTKTCAAGCTTKCACCCATGGCAAAAAATTCCCCATTGCTGCCTC 17831177 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 || || |||||||| || ||||||| | |||||||| || ||||| |||| | ||||| Sbjct 17831176 CCRTAAGAGTCTGGGCCATGTCTCAATCCCAGTGTGGCTAATCATTCTCTTATACCAGCA 17831117 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAAT 193 || |||| | ||||||| ||| ||||||||| ||||| ||||| Sbjct 17831116 ACTGATCATTACCTTGGTAAGCTATTACCTCATAAACTAKCTAAT 17831072 Score = 125 bits (138), Expect = 2e-26 Identities = 136/184 (74%), Gaps = 26/184 (14%) Strand=Plus/Plus Query 10 CCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAA 69 ||| || |||||| | | |||||||||||| || ||||| |||||||||||| || Sbjct 33685549 CCGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGTTTTCGCCCATTGCGGAA 33685606 Query 70 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGA 129 |||||||||| || |||||||||||||||||| |||||||||| | |||||||| |||| Sbjct 33685607 AATTCCCCACTACTACCTCCCGTAGGAGTCTGGGCCGTGTCTCAATCCCAGTGTGGCTGA 33685666 Query 130 TCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGC 189 ||| |||||||||| ||| ||| |||||||||||||| Sbjct 33685667 TCA------------------------TCGCCTTGGTAAGCTATTGCCTCACCAACTAGC 33685702 Query 190 TAAT 193 |||| Sbjct 33685703 TAAT 33685706 >seq14 Length=29158859 Score = 129 bits (142), Expect = 1e-27 Identities = 104/127 (82%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106 ||| ||||| |||||||| || ||||| || ||||||||||||||||||||||| | Sbjct 4318283 TCAAGCTTTTGCCCATTGCGGAAAATTCCACATTGCTGCCTCCCGTAGGAGTCTGGGYCR 4318342 Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGT 166 ||||||||||||| |||| || |||||||||||||||| ||| || |||||||||| Sbjct 4318343 TGTCTCAGTTCCAATGTGGTTGGTCATCCTCTCAGACCAACTACTTATTATCGCCTTGGT 4318402 Query 167 GAGCCAT 173 ||| || Sbjct 4318403 AAGCTAT 4318409 >seq7 Length=26383534 Score = 129 bits (142), Expect = 1e-27 Identities = 105/128 (82%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 71 ATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGAT 130 |||||||||||||| || ||||||||||| | |||||||| | |||||||| ||||| Sbjct 5744242 ATTCCCCACTGCTGTTTCTCGTAGGAGTCTAGGTCGTGTCTCGGCCCCAGTGTGGCTGAT 5744183 Query 131 CATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCT 190 ||||||||| ||||| ||| |||| ||| ||| || ||| ||| ||| |||||| |||| Sbjct 5744182 CATCCTCTCGAACCAGCTACTGATCATCGYCTTAGTAAGCTATTTCCTTACCAACGAGCT 5744123 Query 191 AATCCGAC 198 |||| ||| Sbjct 5744122 AATCAGAC 5744115 >seq17 Length=24923725 Score = 118 bits (130), Expect = 2e-24 Identities = 151/205 (74%), Gaps = 11/205 (5%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 || || ||||| || |||||| | | ||| |||||||| || |||||| ||||||||| Sbjct 14768281 TTCACGATCCGTAGGCCTTCTACCTC-CACACGGCATTG-CTCCATCAGGATTTCGCCCA 14768338 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || ||| |||| ||| |||||| ||| ||| | | || ||| ||| ||||| Sbjct 14768339 TTGCGGAAAATT-CCCATTGCCGCCTCCTATAGAAGTTTAGGCCATGTTACAGCCCCAGT 14768397 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAG--------CCAT 173 ||| |||||||||| || |||||| || |||| || ||||||| || | || Sbjct 14768398 GTGGATGATCATCCTTTCGGACCAGCTATTGATCATCACCTTGGTAAGTTACCAACCTAT 14768457 Query 174 TACCTCACCAACTAGCTAATCCGAC 198 | ||||||||||||||||| ||| Sbjct 14768458 TGTATCACCAACTAGCTAATCAGAC 14768482 >seq12 Length=31678690 Score = 105 bits (116), Expect = 1e-20 Identities = 124/168 (74%), Gaps = 8/168 (5%) Strand=Plus/Minus Query 30 ACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCC 89 ||||||||||| || ||| | ||||| | |||| || || |||||||| | |||| Sbjct 3009930 ACGCGGCATTG-CTCCGTCAAGATTTCGACTATTGCAGAAAATCCCCCACTGTTACCTCT 3009872 Query 90 CGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTA 149 |||| |||| ||| | |||| | || ||||| || || ||||| ||||| ||||| || Sbjct 3009871 CGTAAGAGTATGGGCTGTGTATTAGGCCCAGTATGGCTTATCATTCTCTCGGACCAKCTA 3009812 Query 150 CGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGA 197 | |||| | || ||||| | ||||||||||||||||||| || Sbjct 3009811 CTGATCATTGCATTGGTAA-------CCTCACCAACTAGCTAATCAGA 3009771 >seq5 Length=31606955 Score = 95.1 bits (104), Expect = 3e-17 Identities = 74/89 (83%), Gaps = 6/89 (7%) Strand=Plus/Minus Query 68 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGA-- 125 || || |||||||||||||||||||| |||||||| | |||||||||| ||| ||| | Sbjct 28842350 AAAATACCCCACTGCTGCCTCCCGTAAGAGTCTGGGCAGTGTCTCAGTCCCAATGTCAAT 28842291 Query 126 ----CTGATCATCCTCTCAGACCAGTTAC 150 ||||||||||||| ||||||||||| Sbjct 28842290 GTCGCTGATCATCCTCTTAGACCAGTTAC 28842262 >seq1149 Length=312252 Score = 80.6 bits (88), Expect = 6e-13 Identities = 63/74 (85%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 ||||| |||||| || ||||||||||||||||||| || |||||||| |||||||| Sbjct 218152 CACGCAGCATTG-CTCCATCAGGCTTTCGCCCATTGCGAAAAATTCCCCATCGCTGCCTC 218094 Query 89 CCGTAGGAGTCTGG 102 |||||| ||||||| Sbjct 218093 CCGTAGAAGTCTGG 218080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071986589280