Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq15 223 9e-56 seq13 107 5e-21 seq1251 102 2e-19 seq797 102 2e-19 seq1056 100 7e-19 seq17 96.9 9e-18 seq1227 86.0 2e-14 seq2 75.2 3e-11 seq688 73.4 1e-10 seq264 73.4 1e-10 seq14 73.4 1e-10 seq8 73.4 1e-10 >seq15 Length=47181002 Score = 223 bits (246), Expect = 9e-56 Identities = 311/420 (74%), Gaps = 26/420 (6%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 18602067 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 18602123 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 18602124 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 18602179 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 18602180 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 18602237 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCA---CCCAACAA 243 ||||||| || |||||| | | |||| | ||| ||| |||| |||| ||| Sbjct 18602238 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGCCC----- 18602291 Query 244 AGTGGGCTCC---CACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTC 300 |||||||| ||||||||| || |||||||||| | ||||||||||||||| | Sbjct 18602292 --TGGGCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG 18602349 Query 301 CGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATT 360 |||||||||||| || |||||||||||||||| |||||||||||||| ||| |||||| Sbjct 18602350 -GGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCACTATCGGTCACCCAGGAGTATT 18602408 Query 361 TAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||||||| | | |||||| | ||||| || || | |||| || | ||||||| Sbjct 18602409 TAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGTCCCATGCTACTCG 18602468 >seq13 Length=34719086 Score = 107 bits (118), Expect = 5e-21 Identities = 102/131 (78%), Gaps = 1/131 (1%) Strand=Plus/Minus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 |||||| | |||| || |||||||||| | |||||||||||||| | || |||| Sbjct 22007367 CTCCCATTACTTGACAGCTTACGGTTTCATGTTCTATTTCACTCCCMGATGARGG-TTCT 22007309 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369 |||| || ||||||||| |||||| |||||||||||||| || |||||||||| || Sbjct 22007308 TTTCACCCTTCCCTCACAGTACTACTTCACTATCGGTCACCTAGGAGTATTTAGCTTTAC 22007249 Query 370 AGGATGGTCCC 380 | | ||||| | Sbjct 22007248 AAGGTGGTCYC 22007238 >seq1251 Length=396947 Score = 102 bits (112), Expect = 2e-19 Identities = 102/130 (78%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||||| ||| ||| ||||||| | |||||||||| Sbjct 210388 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCC-TAAATAGGGTTCTTTT 210446 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | || | || |||| ||| |||| Sbjct 210447 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 210506 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 210507 GTGGTCCCCC 210516 Score = 102 bits (112), Expect = 2e-19 Identities = 102/130 (78%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||||| ||| ||| ||||||| | |||||||||| Sbjct 353537 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCC-TAAATAGGGTTCTTTT 353595 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | || | || |||| ||| |||| Sbjct 353596 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 353655 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 353656 GTGGTCCCCC 353665 >seq797 Length=2430782 Score = 102 bits (112), Expect = 2e-19 Identities = 90/111 (81%), Gaps = 1/111 (1%) Strand=Plus/Plus Query 269 TACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGG 328 |||||||||| | ||||||||||||||| | | | |||||||| || ||||||||||| Sbjct 972417 TACGGTTTCATGTTCTATTTCACTCCCCAATA-GAGATTCTTTTCACCCTTCCCTCACGG 972475 Query 329 TACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCC 379 ||||| |||| |||| ||| || |||||||||||||| | | |||||| Sbjct 972476 TACTACTTCAATATCAATCACCCATGAGTATTTAGCCTTGCAAGGTGGTCC 972526 >seq1056 Length=2373031 Score = 100 bits (110), Expect = 7e-19 Identities = 101/130 (78%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||||| ||| ||| ||||||| |||||||||| Sbjct 1048082 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCC-WAAATAGGGTTCTTTT 1048140 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | || | || |||| ||| |||| Sbjct 1048141 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 1048200 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 1048201 GTGGTCCCCC 1048210 >seq17 Length=24923725 Score = 96.9 bits (106), Expect = 9e-18 Identities = 102/136 (75%), Gaps = 6/136 (4%) Strand=Plus/Plus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCC------GG 303 ||||||||||||| || ||| |||||| | |||||||||||||| ||| || Sbjct 19830592 CTCCCACTGCTTGGGAGCTTACTGTTTCATGTTCTATTTCACTCCCTATTCCCTAATGGG 19830651 Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363 |||||||||| || |||||| | |||| | |||| |||| |||| || ||| ||| | Sbjct 19830652 GGTTCTTTTCACCCTTCCCTYATAGTACCACTTCATTATCTGTCACCCAAGAGTCTTTWG 19830711 Query 364 CCTTGGAGGATGGTCC 379 ||||| | | |||||| Sbjct 19830712 CCTTGCAAGGTGGTCC 19830727 >seq1227 Length=6592037 Score = 86.0 bits (94), Expect = 2e-14 Identities = 227/333 (68%), Gaps = 26/333 (8%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||||| || |||||| ||| ||||| | |||||| ||||| | Sbjct 5500556 CCACAACTCAT-CCGCTAA-TTCTTCAACATCAGTTGGTTCAGACCTCCACTTAGTT-TC 5500612 Query 69 ACCCAACCTTTCAACCTGCCCA--TA-GGATAGATCGCCCGGTTTTCGGGTCTATTTCCC 125 ||| || | | || || | || ||||||||| | || ||||| || | Sbjct 5500613 ACCYAAACCT-----CTTCCYAGTTATGGATAGATCAATCAAGTT-CGGGTTCATAAGC- 5500665 Query 126 AGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAG 183 || ||| | |||||| ||||||||| |||| |||||| ||| | ||| |||| Sbjct 5500666 AGTGACAATT-GCCCTATTAAGACTCGTTTTT-GCTACGGCTCYGGTGGGTTCCCTTAAC 5500723 Query 184 CTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243 | ||||||| || |||| | || |||| | ||| || | ||| | | ||| Sbjct 5500724 CAA-GCCACTGCCTATGAGTCRCCAACTCATTCTTCAATGGGCATGCAATYAG--AACCC 5500780 Query 244 AGTGGGCTCC---CACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTC 300 || ||||| |||| |||| || |||| ||||| | ||||||||||| ||| | Sbjct 5500781 --TGAGCTCCTTCCACTRCTTGGGAGCTTACGATTTCATGTTCTATTTCACTTCCCGAT- 5500837 Query 301 CGGGGTTCTTTTCGCCTTTCCCTCACGGTACTA 333 |||||||||||| || || ||||| ||||||| Sbjct 5500838 GGGGGTTCTTTTCACCCTTTCCTCATGGTACTA 5500870 >seq2 Length=36374806 Score = 75.2 bits (82), Expect = 3e-11 Identities = 56/66 (85%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| |||||||||| |||||| ||| |||||| || || |||||||||||| Sbjct 32965638 GTTCTTTTCATCTTTCCCTCATGGTACTTGTTTGCTATCGATCTCTCGGTAGTATTTAGC 32965697 Query 365 CTTGGA 370 |||||| Sbjct 32965698 CTTGGA 32965703 >seq688 Length=1343062 Score = 73.4 bits (80), Expect = 1e-10 Identities = 61/74 (82%), Gaps = 3/74 (4%) Strand=Plus/Plus Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365 |||||||| || |||||||||||||||| |||||||||| ||| | ||||| ||||| Sbjct 446704 TTCTTTTCACCCTTCCCTCACGGTACTACTTCACTATCGATCACCC---AGTATGTAGCC 446760 Query 366 TTGGAGGATGGTCC 379 ||| | | |||||| Sbjct 446761 TTGCAAGGTGGTCC 446774 >seq264 Length=1384563 Score = 73.4 bits (80), Expect = 1e-10 Identities = 61/74 (82%), Gaps = 3/74 (4%) Strand=Plus/Plus Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365 |||||||| || |||||||||||||||| |||||||||| ||| | ||||| ||||| Sbjct 461687 TTCTTTTCACCCTTCCCTCACGGTACTACTTCACTATCGATCACCC---AGTATGTAGCC 461743 Query 366 TTGGAGGATGGTCC 379 ||| | | |||||| Sbjct 461744 TTGCAAGGTGGTCC 461757 >seq14 Length=29158859 Score = 73.4 bits (80), Expect = 1e-10 Identities = 55/65 (85%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 315 CCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGAT 374 || |||||||||||||||| |||||||||| ||| || ||||||||||||| | ||| Sbjct 28785046 CCCTTCCCTCACGGTACTACTTCACTATCGATCACCCATGAGTATTTAGCCTTACAAGAT 28785105 Query 375 GGTCC 379 ||||| Sbjct 28785106 GGTCC 28785110 >seq8 Length=29603939 Score = 73.4 bits (80), Expect = 1e-10 Identities = 81/107 (76%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 273 GTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACT 332 |||||| |||||||||||||| | |||||||||||| || || ||| | |||| Sbjct 12437942 GTTTCATTTTCTATTTCACTCCCTGATA-GGGGTTCTTTTCACCCTTTCCTTCCAGTACC 12438000 Query 333 AGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCC 379 | |||||||| | ||| ||| | |||||| ||||| | | |||||| Sbjct 12438001 ACTTCACTATTGATCACCCAGGACTATTTAACCTTGCATGGTGGTCC 12438047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241584467584