Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq957 214 4e-53 seq1251 136 8e-30 seq11 125 1e-26 seq438 120 6e-25 seq16 120 6e-25 seq421 118 2e-24 seq9 118 2e-24 seq14 111 3e-22 seq7 109 1e-21 seq5 84.2 4e-14 seq12 80.6 5e-13 seq2 78.8 2e-12 >seq957 Length=3583874 Score = 214 bits (236), Expect = 4e-53 Identities = 231/305 (76%), Gaps = 18/305 (6%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || | ||||||||||||||||||||| Sbjct 6019 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAWTTCCCCACTGCTGCCTCCCGTAG 5960 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 5959 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 5900 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || | Sbjct 5899 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 5840 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | || | ||||||||| Sbjct 5839 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGC 5796 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| | | || |||||||| || ||| |||||||||||||||| Sbjct 5795 CGTTTCCAGCTGTTGTTCCCCYCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 5737 Query 300 CCACT 304 ||||| Sbjct 5736 CCACT 5732 >seq1251 Length=396947 Score = 136 bits (150), Expect = 8e-30 Identities = 122/153 (80%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| || ||||||||||||| ||||| |||||| Sbjct 275732 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 275673 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | ||| || || || |||| ||| | || Sbjct 275672 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGG 275613 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||| || ||| || |||||||||||||| Sbjct 275612 CTTGGTCAGCCTTTACCTGACCAACTACCTAAT 275580 >seq11 Length=35299535 Score = 125 bits (138), Expect = 1e-26 Identities = 208/305 (68%), Gaps = 42/305 (14%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||| || |||||||||| Sbjct 33685572 GGCATTGCTCCGTCAGGTTTTCGCCCATTGCGGAAAATTCCCCACTACTACCTCCCGTAG 33685631 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||| ||||| ||||| | ||| Sbjct 33685632 GAGTCTGGGCCGTGTCTCAATCCCAGTGTGG------------------------CTGAT 33685667 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||||||||| ||||| | ||||||||| || | Sbjct 33685668 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATTAGACGCGAGCCCCTCCTYGG 33685727 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | || | |||||||| Sbjct 33685728 GCGGATTCCTCCTT------------TTGC--TCCTC--AACCTACGAGGTATTAGTAGC 33685771 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 ||||||| ||| |||| ||| || |||||||| || ||| |||||||||||||||| Sbjct 33685772 TGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 33685830 Query 300 CCACT 304 ||||| Sbjct 33685831 CCACT 33685835 Score = 102 bits (112), Expect = 2e-19 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||| | || | ||||| | || || ||||| ||||||||||| || ||||||||||| Sbjct 17831218 TCAAGCTTKCACCCATGGCAAAAAATTCCCCATTGCTGCCTCCCRTAAGAGTCTGGGCCA 17831159 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 ||||||| ||||| |||||| ||| |||| | || || || |||| | |||||| Sbjct 17831158 TGTCTCAATCCCAGTGTGGCTAATCATTCTCTTATACCAGCAACTGATCATTACCTTGGT 17831099 Query 133 GGGCTATTATCTCACCAACTACCTAAT 159 ||||||| |||| ||||| ||||| Sbjct 17831098 AAGCTATTACCTCATAAACTAKCTAAT 17831072 >seq438 Length=786927 Score = 120 bits (132), Expect = 6e-25 Identities = 98/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 41 CCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAAC 100 ||||||||||||||||||| |||||| |||||||||||||||| | ||||| | ||| | Sbjct 333546 CCCACTGCTGCCTCCCGTATGAGTCTAGGCCGTGTCTCAGTCCTAGTGTGGTTGATCATC 333605 Query 101 CTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 ||||| | || ||||| |||| || |||||| |||||| || |||||||| ||||| Sbjct 333606 CTCTCGGACCAGCTACTGATCATCATCTTGGTAAGCTATTGCCTTACCAACTAGCTAAT 333664 >seq16 Length=20664393 Score = 120 bits (132), Expect = 6e-25 Identities = 98/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 41 CCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAAC 100 ||||||||||||||||||| |||||| |||||||||||||||| | ||||| | ||| | Sbjct 20117108 CCCACTGCTGCCTCCCGTATGAGTCTAGGCCGTGTCTCAGTCCTAGTGTGGTTGATCATC 20117167 Query 101 CTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 ||||| | || ||||| |||| || |||||| |||||| || |||||||| ||||| Sbjct 20117168 CTCTCGGACCAGCTACTGATCATCATCTTGGTAAGCTATTGCCTTACCAACTAGCTAAT 20117226 Score = 82.4 bits (90), Expect = 2e-13 Identities = 83/104 (80%), Gaps = 3/104 (3%) Strand=Plus/Plus Query 50 GCCTCCCGTAGGAGTCTGGGCC-GTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGT 108 ||||||| |||||||||||||| |||||||||||||| ||||| | || | || ||| Sbjct 17684553 GCCTCCC-TAGGAGTCTGGGCCCGTGTCTCAGTCCCAGCGTGGCTGATC-ATCTTTCACA 17684610 Query 109 CCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACT 152 || |||| |||| || |||||| |||||| |||||||||| Sbjct 17684611 CCACCTACTGATCATCTCCTTGGTAAGCTATTGCCTCACCAACT 17684654 >seq421 Length=1359463 Score = 118 bits (130), Expect = 2e-24 Identities = 126/168 (75%), Gaps = 11/168 (7%) Strand=Plus/Plus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCAC-----TGCTGCCTCCCGTAGGAGTCTG 67 ||||| ||| ||||||| || ||||||| | || ||||||||||||||||||| Sbjct 613996 TCAGGCTTTAGCCCATTGYKGAAAATCCCCCCCCCCCTTGTTGCCTCCCGTAGGAGTCTG 614055 Query 68 GGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGC 127 ||||||||||||| |||||| | ||| |||||| | || |||| |||| ||| | Sbjct 614056 GGCCGTGTCTCAG------TGTGGCTGATCATCCTCTCGGACCAACTACTGATCATCGCC 614109 Query 128 TTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175 ||||| | |||| | ||||||||| |||||| || |||||| || Sbjct 614110 TTGGTAAGTTATTGCCCCACCAACTAGCTAATCAAACGTGAGCCCCTC 614157 >seq9 Length=33717675 Score = 118 bits (130), Expect = 2e-24 Identities = 125/167 (75%), Gaps = 10/167 (6%) Strand=Plus/Plus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCAC----TGCTGCCTCCCGTAGGAGTCTGG 68 ||||| ||| ||||||| || ||||||| | | |||||||||||||||||||| Sbjct 179508 TCAGGCTTTAGCCCATTGYKGAAAATCCCCCCCCCCYTRTTGCCTCCCGTAGGAGTCTGG 179567 Query 69 GCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCT 128 |||||||||||| |||||| | ||| |||||| | || |||| |||| ||| || Sbjct 179568 GCCGTGTCTCAG------TGTGGCTGATCATCCTCTCGGACCAACTACTGATCATCGCCT 179621 Query 129 TGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175 |||| | |||| | ||||||||| |||||| || |||||| || Sbjct 179622 TGGTAAGTTATTGCCCCACCAACTAGCTAATCAAACGTGAGCCCCTC 179668 >seq14 Length=29158859 Score = 111 bits (122), Expect = 3e-22 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||| | ||| ||||||| | || || || || |||||||||||||||||||||||| | Sbjct 4318283 TCAAGCTTTTGCCCATTGCGGAAAATTCCACATTGCTGCCTCCCGTAGGAGTCTGGGYCR 4318342 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 ||||||||| ||||||||| | ||| |||||||| || |||| || ||| |||||| Sbjct 4318343 TGTCTCAGTTCCAATGTGGTTGGTCATCCTCTCAGACCAACTACTTATTATCGCCTTGGT 4318402 Query 133 GGGCTAT 139 ||||| Sbjct 4318403 AAGCTAT 4318409 >seq7 Length=26383534 Score = 109 bits (120), Expect = 1e-21 Identities = 108/139 (78%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 37 ATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTT 96 || ||||||||||| || ||||||||||| || |||||||| | |||| |||||| | | Sbjct 5744242 ATTCCCCACTGCTGTTTCTCGTAGGAGTCTAGGTCGTGTCTCGGCCCCAGTGTGGCTGAT 5744183 Query 97 CAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCT 156 || |||||| || ||||| |||| ||| ||| || |||||| || |||||| | || Sbjct 5744182 CATCCTCTCGAACCAGCTACTGATCATCGYCTTAGTAAGCTATTTCCTTACCAACGAGCT 5744123 Query 157 AATCGGCCGCGAGCCCATC 175 |||| | ||||| ||||| Sbjct 5744122 AATCAGACGCGA--CCATC 5744106 >seq5 Length=31606955 Score = 84.2 bits (92), Expect = 4e-14 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 34 AATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGT 89 || || |||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 28842350 AAAATACCCCACTGCTGCCTCCCGTAAGAGTCTGGGCAGTGTCTCAGTCCCAATGT 28842295 >seq12 Length=31678690 Score = 80.6 bits (88), Expect = 5e-13 Identities = 122/175 (70%), Gaps = 7/175 (4%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||| | |||| | |||| || ||||||||||| | |||| |||| Sbjct 3009926 GGCATTGCTCCGTCAAGATTTCGACTATTGCAGAAAATCCCCCACTGTTACCTCTCGTAA 3009867 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||| ||||| |||| | || |||| | |||| ||| ||||| | || |||| ||| Sbjct 3009866 GAGTATGGGCTGTGTATTAGGCCCAGTATGGCTTATCATTCTCTCGGACCAKCTACTGAT 3009807 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175 | | | |||| | | ||||||||||| |||||| | |||| ||| || Sbjct 3009806 CATTGCATTGG-------TAACCTCACCAACTAGCTAATCAGATGCGAACCCCTC 3009759 >seq2 Length=36374806 Score = 78.8 bits (86), Expect = 2e-12 Identities = 127/179 (71%), Gaps = 3/179 (2%) Strand=Plus/Minus Query 2 GCGTCGCTGCATCAGGG-TTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 |||| ||| | ||| || ||| | ||||| || | ||||||| | |||||| |||| Sbjct 35681583 GCGTTGCTCCGTCAAGGCTTTTGCACATTGCAAAAATTTCCCCACTACGGCCTCCAGTAG 35681524 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCT-ACCGA 119 |||| ||| | ||||||||||| || |||||| | ||| ||| | ||| | || Sbjct 35681523 GAGTATGGCCTGTGTCTCAGTCTCAGTGTGGCTGATCATTCTCCTGGAATAGCTAAATGA 35681464 Query 120 TCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTT 178 || ||| |||||| |||| | |||||| |||| || | | ||||||||| || || Sbjct 35681463 TCATCGCCTTGGTAAGCTAGTGGCTCACC-ACTAGATAGACAGACGCGAGCCCTTCGTT 35681406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998387510016