Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq1251 123 2e-26 seq957 123 2e-26 seq396 122 7e-26 seq15 102 7e-20 seq11 98.7 8e-19 seq13 84.2 2e-14 seq10 82.4 6e-14 seq156 75.2 9e-12 >seq1251 Length=396947 Score = 123 bits (136), Expect = 2e-26 Identities = 124/160 (78%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 276917 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 276859 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 276858 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 276799 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||||| || | |||| Sbjct 276798 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 276759 >seq957 Length=3583874 Score = 123 bits (136), Expect = 2e-26 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| |||||||||| ||| | ||| ||| ||||||| ||||||||| Sbjct 6918 CGAGTTGCAGCCTACAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 6859 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||| | ||| Sbjct 6858 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGRGGCAT 6799 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 6798 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 6759 >seq396 Length=1408169 Score = 122 bits (134), Expect = 7e-26 Identities = 125/161 (78%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||| |||||||| | ||| | ||| | ||| ||| ||||||| |||||||| Sbjct 1203750 CGAGTTGCAGCCTACAATCTGAACTGAGGATG-AGTTTTTGGAGTTAGCTCACCCTCGCG 1203692 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 || | || |||| ||| |||||||| | |||| |||| | |||||||| || Sbjct 1203691 GGATCACGACCCTTTGTCCCGGCCATTGTAGCATCTGTGTCGCCCAAGGCATAAGGGGCA 1203632 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||| ||||||||||||||| |||||||||||| ||||||| Sbjct 1203631 TGATGACTTGACGTCATCCTCACCTTCCTCCGTCTTGTCAC 1203591 >seq15 Length=47181002 Score = 102 bits (112), Expect = 7e-20 Identities = 119/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 4 AGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGG 62 |||| ||| |||||||| | ||| | ||| ||| | | ||||||| ||||| |||| Sbjct 25947419 AGTTACAGCCTACAATCTGAACTGAGGATGGGTTTTTTKAG-TTAGCTCACCCTCACGGG 25947477 Query 63 TTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATG 122 | ||| |||| ||| ||||||||| | |||| |||| | |||||||| |||| Sbjct 25947478 ATCGCGACCCTTTGTCCCAACCATTGTAGCATCTGTGTCGCCCAAGGCATAAGGGGCATG 25947537 Query 123 AGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | ||||||||||||||| ||||||||| | ||||||| Sbjct 25947538 ATGACTTGACGTCATCCTCACCTTCCTTCATCTTGTCAC 25947576 >seq11 Length=35299535 Score = 98.7 bits (108), Expect = 8e-19 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 45 TTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCC 104 ||||||| ||||| |||| | ||| |||| | | ||||||||| ||||||| ||| Sbjct 33684717 TTAGCTCACCCTCACGGGATCGCGACCCTTTTTCCCGACCATTGTAGCACGTGTGTCGCC 33684776 Query 105 CTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||| ||||| ||||||||||||||| ||||||||| ||| || |||| Sbjct 33684777 TAAGGCATAAGGGGCATGATGACTTGACGTCATCCTCACCTTCCTTCGGCTTATCAC 33684833 >seq13 Length=34719086 Score = 84.2 bits (92), Expect = 2e-14 Identities = 87/116 (75%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 46 TAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCC 105 |||||| |||| || || | ||| |||| || ||||||||| ||||||| || Sbjct 22004196 TAGCTCACCCTMGCAGGATCGCGACCCTTTGCCCTAACCATTGTAGCACGTGTGTTACCT 22004137 Query 106 TACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||||||| ||||| ||||||||||||||| ||| ||| ||||| || |||| Sbjct 22004136 AGGGCATAAGGGGCATGATGACTTGACGTCATCCTCACMTTCYTCCGGCTTATCAC 22004081 >seq10 Length=33391235 Score = 82.4 bits (90), Expect = 6e-14 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 75 TGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGT 134 |||| | |||||||| || |||| |||| ||||||| |||||||| |||||||||| Sbjct 7740698 TGTAATTTCCATTGTAGCACATGTGTGGCCCAACCCATATGGGCCATGCGGACTTGACG- 7740756 Query 135 CATCCCCACCTTCCTCC 151 ||||||||||||||||| Sbjct 7740757 CATCCCCACCTTCCTCC 7740773 Score = 77.0 bits (84), Expect = 3e-12 Identities = 92/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 37 TTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGT 96 || ||| ||||||| ||||| ||||| || ||| | | |||||||| |||| Sbjct 18289929 TTTTGGAGTTAGCTCACCCTCATGGGTTCACGATCCTTTATTCCAGCCATTGTAGCACGT 18289988 Query 97 GTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 ||| |||| |||||||| ||||| ||||||||||||| | || ||||||| || || Sbjct 18289989 GTGTCGCCCAGGACATAAGGGGCATGATGACTTGACGTCATTCTCAACTTCCTCTGGATT 18290048 Query 157 GTCAC 161 |||| Sbjct 18290049 ATCAC 18290053 >seq156 Length=1131175 Score = 75.2 bits (82), Expect = 9e-12 Identities = 64/79 (81%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142 |||||||| || |||| |||| ||||||| ||||| ||||||||||||||| || Sbjct 518025 CCATTGTAGCACATGTGTTGCCCAGGGCATAAGGAGCATGATGACTTGACGTCATCCTCA 518084 Query 143 CCTTCCTCCGGTTTGTCAC 161 ||||||||||| || |||| Sbjct 518085 CCTTCCTCCGGCTTATCAC 518103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415994958470