Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq957 163 5e-38 seq1251 136 7e-30 seq11 105 1e-20 seq855 73.4 7e-11 >seq957 Length=3583874 Score = 163 bits (180), Expect = 5e-38 Identities = 207/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 6365 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 6306 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 6305 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 6246 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | ||||| Sbjct 6245 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 6186 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| |||||| Sbjct 6185 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTA 6126 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||||| ||||||||| ||| || Sbjct 6125 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 6081 >seq1251 Length=396947 Score = 136 bits (150), Expect = 7e-30 Identities = 203/286 (71%), Gaps = 4/286 (1%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| |||||||| | ||||||| || |||| | | |||||||| ||| || Sbjct 276089 CCCATGCTTTCGCACTCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGT 276030 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| |||| |||| || |||||||| ||||||||| |||||| | ||||| ||| Sbjct 276029 TCCTTCGTAGATCTTCGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCAC 275970 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGA-GCCCATAGTTTTCACATCTGAC 179 ||||| || ||||| | ||| | | ||| | | | |||||| | || Sbjct 275969 TCAAGTGAATTGGTTTCGAGAGCATTCCACCAGTTTTTGGCGAC---TTTCACTTTCAAC 275913 Query 180 TTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC 239 | | |||||||| ||||||||| || | | | |||| | ||| |||||| || | Sbjct 275912 CCGATTCACCGCCTACGTGCCCTTTACGCCTAGTCATTCCGAAGAACACTTGCCCCCCCC 275853 Query 240 GTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 || |||||||||||||||||||| ||||||||| ||||| |||||| Sbjct 275852 GTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 275807 >seq11 Length=35299535 Score = 105 bits (116), Expect = 1e-20 Identities = 193/282 (68%), Gaps = 2/282 (1%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||| | ||||| |||||| | | |||||| | || | | |||||||| | Sbjct 33685226 GCTTTYGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGTTTTTGYCGTTGGTGTTCTTT 33685285 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||| ||||||| ||| | |||||| | || || | |||| || Sbjct 33685286 CCAATCTCTACGTATTTCACTGCTCYATCGAAAATTCCCTCTACCCCTACCATACTCCAG 33685345 Query 126 AAAAACAGTTTCAAATGCAGG-CTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCC 184 |||||| | || | ||| |||||||||| | ||| ||| | ||||| Sbjct 33685346 CTTGGTAGTTTCCACCGCCTGTCTA-GGGTTGAGCCTTGGGATTTGACAACGGACTTAAA 33685404 Query 185 TTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATT 244 || |||||| | |||||| |||||| | |||||||||||||||| ||| ||||| Sbjct 33685405 AAGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATT 33685464 Query 245 ACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCA 286 | |||||||||||||| ||||||||| |||||||| || Sbjct 33685465 ATTGCGGCTGCTGGCACAGAGTTAGCCGATACTTATTCCCCA 33685506 >seq855 Length=4499644 Score = 73.4 bits (80), Expect = 7e-11 Identities = 73/95 (77%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || |||||| | |||||| ||||| | | ||||||| ||||| ||| |||||||| Sbjct 73668 CCACCTACAAACGCTTTACGTCCAATTATTTGGGATAACACTTGCATCCTCTGTATTACC 73609 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 ||| |||| ||||| ||||||||| ||||||| Sbjct 73608 GCGACTGCGGGCACAGAGTTAGCCGATACTTATTC 73574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828789955721